Job Description P00579 Confidence 71.67% Date Thu Jan 5 10:56:46 GMT 2012 Rank 184 Aligned Residues 381 % Identity 8% Template c1sjjB_ PDB info PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin Resolution 20.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																												.	.																																													.	.	.	.	.	.	.	.
Query SS confidence																												.	.																																													.	.	.	.	.	.	.	.
Query Sequence		Q	N	P	Q	S	Q	L	K	L	L	V	T	R	G	K	E	Q	G	Y	L	T	Y	A	E	V	N	.	.	D	H	L	P	E	D	I	V	D	S	D	Q	I	E	D	I	I	Q	M	I	N	D	M	G	I	Q	V	M	E	E	A	P	D	A	D	D	L	M	L	A	E	N	T	A	.	.	.	.	.	.	.	.
Query Conservation																												.	.																																													.	.	.	.	.	.	.	.
Alig confidence																												.	.																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	L	M	E	D	Y	E	K	L	A	S	D	L	L	E	W	I	R	R	T	I	P	W	L	E	N	R	A	P	E	N	T	M	Q	A	M	Q	Q	K	L	E	D	F	R	D	Y	R	R	L	H	K	P	P	K	V	Q	E	K	C	Q	L	E	I	N	F	N	T	L	Q	T	K	L	R	L	S	N	R	P	A
Template Known Secondary structure																																	S	S																		T																						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
													73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.										.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	D	E	D	A	A	E	A	A	A	Q	V	L	S	S	V	E	S	E	I	G	R	T	T	D	P	V	R	M	Y	M	R	E	M	G	T	V	E	L	L	T	R	E	G	E	I	D	I	A	K	R	I	E	D	G	I	.	.	.	.	.	.	.	.	.	N	Q	V	Q	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	M	P	S	E	G	K	M	V	S	D	I	N	N	A	W	G	G	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	D	H	L	A	E	K	F	R	Q	K	A	S	I	H	E	S	W	T	D	G	K	E	A	M	L	Q	Q	K	D	Y	E	T	A	T	L	S	E	I	K	A
Template Known Secondary structure					S	S	T	T		T	T	T												T	T	T																																T	T	T	T						T	S		T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	E	Y	P	E	A	I	T	Y	L	L	E	Q	Y	D	R	V	E	A	E	E	A	R	L	S	D	L	I	T	G	F	V	D	P	N	A	E	E	D	L	A	P	T	A	T	H	V	G	S	E	L	S	Q	E	D	L	D	D	D	E	D	E	D	E	E	D	G	D	D	D	S	A	D	D	D	N	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	K	K	H	E	A	F	E	S	D	L	A	A	H	Q	D	R	V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	Y	D	S	P	S	V	N	A	R	C	Q	K	I	C	D	Q	W	D	N	L	G	A	L	T	Q	K	R	R	E	A	L	E	R	T	E	K	L	L	E	T	I	D	Q	L	Y	L
Template Known Secondary structure														T	T																	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	E	L	A	R	E	K	F	A	E	L	R	A	Q	Y	V	V	T	R	D	T	.	.	I	K	A	K	G	R	S	H	A	T	A	Q	E	E	I	L	K	L	S	E	V	F	K	Q	F	R	L	V	P	K	Q	F	D	Y	L	V	N	S	M	R	V	M	M	D	R	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E	D	L	Q	D	T	F	I	V	H	T	I	E	E	I	Q	G	L	T	T	A	H	E	Q	F	K	A	T	L	P	D	A	D	K	E	R	Q	A	I	L	G	I	H	N	E	V	S	K	I	V	Q	T	Y	H	V	N	M	A	G	T	N	P	Y
Template Known Secondary structure							T	T	T	T	T										T	T						S	S																	T																								T	T	T			S		S			S	S
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
									280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	V	R	T	Q	E	R	L	I	M	K	L	C	V	E	Q	C	K	M	P	K	K	N	F	I	T	L	F	T	G	N	E	T	S	D	T	W	F	N	A	A	I	A	M	N	K	P	W	S	E	K	L	H	D	V	S	E	E	V	H	R	A	L	Q	K	L	Q	Q	I	E	E	E	T	G
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	I	T	P	Q	E	I	N	G	K	W	E	H	V	R	Q	L	V	P	R	R	D	Q	A	L	M	E	E	H	A	R	Q	Q	Q	N	E	R	L	R	K	Q	F	G	A	Q	A	N	V	I	G	P	W	I	Q	T	K	M	E	E	I	G	R	I	S	I	E	M	H	G	T	L	E	D	Q	L	N	H	L	R
Template Known Secondary structure			S																													T	T																													T	T	S	S	T	T		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	E	Q	V	K	D	I	N	R	R	M	S	I	G	E	A	K	A	R	R	A	K	K	E	M	V	E	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Y	E	K	S	I	V	N	Y	K	P	K	I	D	Q	L	E	G	D	H	Q	Q	I	Q	E	A	L	I	F	D	N
Template Known Secondary structure											T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.

No model constructed - rank, confidence too low