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Job DescriptionP00579
Confidence100.00%DateThu Jan 5 10:56:46 GMT 2012
Rank4Aligned Residues159
% Identity60%Templatec1ku2A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:sigma factor siga; PDBTitle: crystal structure of thermus aquaticus rna polymerase sigma2 subunit fragment containing regions 1.2 to 3.1
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   349350.........360.........370.........380.........390.........400.........410.........420........
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Query Sequence  EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
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Template Sequence  EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS
Template Known Secondary structure  S

TTTT
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S
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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   429430.........440.........450.........460.........470.........480........ .490.........500......
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Query Sequence  TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML. . MPEDKIRKVLKIAKEPIS
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Template Sequence  TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS
Template Known Secondary structure  TTS






TS



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   252.......260.........270.........280.........290.........300.........310.........320.........330.
 
   507
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Query Sequence  M
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Template Sequence  L
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   332
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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