Job Description P00579 Confidence 77.99% Date Thu Jan 5 10:56:46 GMT 2012 Rank 149 Aligned Residues 152 % Identity 18% Template c1c9bI_ PDB info PDB header:transcription/dna Chain: I: PDB Molecule:general transcription factor iib; PDBTitle: crystal structure of a human tbp core domain-human tfiib2 core domain complex bound to an extended, modified3 adenoviral major late promoter (admlp) Resolution 2.65 Å

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		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.																				.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	T	R	S	I	A	D	Q	A	R	T	I	R	I	P	V	H	M	I	E	T	I	N	K	L	N	R	I	S	R	Q	M	L	Q	E	M	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	T	P	E	E	L	A	E	R	M	L	M	P	E	D	K	I	R	K	V	L
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	F	K	E	I	T	T	M	A	D	R	I	N	L	P	R	N	I	V	D	R	T	N	N	L	F	K	Q	V	Y	E	Q	K	S	L	K	G	R	A	N	D	A	I	A	S	A	C	L	Y	I	A	C	R	Q	E	G	V	P	R	T	F	K	E	I	C	A	V	S	R	I	S	K	K	E	I	G	R	C	F
Template Known Secondary structure														T	T																				T		S	T	T	S																	T	T											T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.		.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																																																				.																			.
Query SS confidence																																																				.																			.
Query Sequence		K	I	A	K	E	P	I	S	M	E	T	P	I	G	D	D	E	D	S	H	L	G	D	F	I	E	D	T	T	L	E	L	P	L	D	S	A	T	T	E	S	L	R	A	A	T	H	D	V	L	.	A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	.	M	N	T	D	Y	T	L	E	E	V
Query Conservation																																																				.																			.
Alig confidence															.																																					.																			.
Template Conservation															.
Template Sequence		K	L	I	L	K	A	L	E	T	S	V	D	L	.	I	T	T	G	D	F	M	S	R	F	C	S	N	L	C	L	P	K	Q	V	Q	M	A	A	T	H	I	A	R	K	A	V	E	L	D	L	V	P	G	R	S	P	I	S	V	A	A	A	A	I	Y	M	A	S	Q	A	S	A	E	K	R	T	Q	K	E	I
Template Known Secondary structure								T	T						.			T											T	T																			T	T		S	T	T																		S	S	S
Template Predicted Secondary structure															.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		577	.	.	580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Q	F	D	V	T	R	E	R	I	R	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	I	A	G	V	A	D	V	T	I	R	Q	S
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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