Job Description P00579 Confidence 58.39% Date Thu Jan 5 10:56:46 GMT 2012 Rank 269 Aligned Residues 161 % Identity 15% Template c1aisB_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:protein (transcription initiation factor iib); PDBTitle: tata-binding protein/transcription factor (ii)b/tata-box2 complex from pyrococcus woesei Resolution 2.10 Å

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		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.																				.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	T	W	W	I	R	Q	A	I	T	R	S	I	A	D	Q	A	R	T	I	R	I	P	V	H	M	I	E	T	I	N	K	L	N	R	I	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	L	Q	E	M	G	R	E	P	T	P	E	E	L	A	E	R	M	L	M	P
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		F	A	L	S	E	L	D	.	.	.	.	.	.	.	.	R	I	T	A	Q	L	K	L	P	R	H	V	E	E	E	A	A	R	L	Y	R	E	A	V	R	K	G	L	I	R	G	R	S	I	E	S	V	M	A	A	C	V	Y	A	A	C	R	L	L	K	V	P	R	T	L	D	E	I	A	D	I	A	R	V	D
Template Known Secondary structure									.	.	.	.	.	.	.	.							T																		T	T	T	T	T	T	T																			T												T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		1111	.	.	.	.	.	.									.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		E	D	K	I	R	K	V	L	K	I	A	K	E	P	I	S	M	E	T	P	I	G	D	D	E	D	S	H	L	G	D	F	I	E	D	T	T	L	E	L	P	L	D	S	A	T	T	E	S	L	R	A	A	T	H	D	V	L	A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	.	.	.	D	M
Query Conservation																																																																													.	.	.
Alig confidence																																																																													.	.	.
Template Conservation
Template Sequence		K	K	E	I	G	R	S	Y	R	F	I	A	R	N	L	N	L	T	P	K	K	L	F	V	K	P	T	D	Y	V	N	K	F	A	D	E	L	G	L	S	E	K	V	R	R	R	A	I	E	I	L	D	E	A	Y	K	R	G	L	T	S	G	K	S	P	A	G	L	V	A	A	A	L	Y	I	A	S	L	L	E
Template Known Secondary structure																T	T			T	T	T	T				G	G	G	G									T																			T	T			T	T	S																	T
Template Predicted Secondary structure
Template SS confidence
		1183	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	K	R	T	Q	R	E	V	A	E	V	A	R	V	T	E	V	T	V	R	N	R	Y	K	E	L	V	E	K	L
Template Known Secondary structure		T													T
Template Predicted Secondary structure
Template SS confidence
		1263	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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