Job Description P77858 Confidence 2.43% Date Wed Jan 25 15:21:12 GMT 2012 Rank 59 Aligned Residues 194 % Identity 7% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		I	S	S	M	L	V	L	A	M	A	L	P	L	F	I	T	V	S	P	F	A	G	G	G	D	L	I	T	L	I	Y	L	L	A	L	F	R	F	F	F	A	L	S	G	L	D	T	G	S	.	.	P	F	A	G	V	G	A	S	R	E	L	T	L	G	I	L	V	E	P	M	L	I	L	S	L	L	V	L	A
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S
Template Known Secondary structure																							T			B																						T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	G	S	T	H	I	E	M	I	S	N	T	L	A	M	G	W	N	S	P	L	T	T	V	L	A	L	L	A	C	G	F	A	C	F	I	E	M	G	K	I	P	F	D	V	A	E	A	E	Q	E	L	Q	E	G	P	L	T	E	Y	S	G	A	G	L	A	L	A	K	W	G	L	G	L	K	Q	V	V
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		S	P	Y	R	G	P	D	A	D	S	L	.	.	.	.	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y
Template Known Secondary structure			S			S	S				B	G	.	.	.	.	G	G		S	S		T	T	T	S														T	T	T		T	T	S																T	T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.					360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	S	L	F	V	A	L	F	L	P	F	G	R	A	Q	E	L	S	L	A	C	L	L	T	S	L	V	V	T	L	L	K	V	L	L	I	F	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W	Q	Y	S	A	G	G	I	V	V	L	I	S	A	L	L	V	L	V	L	G	V
Template Known Secondary structure											S								S	T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions