Job Description P77858 Confidence 9.20% Date Wed Jan 25 15:21:12 GMT 2012 Rank 7 Aligned Residues 194 % Identity 16% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	S	S	M	L	V	L	A	M	A	L	P	L	F	I	T	V	S	P	F	A	G	G	G	D	L	I	T	L	I	Y	L	L	A	L	F	R	F	F	F	A	L	S	G	L	D	T	G	S	P	F	A	G	V	G	A	S	R	E	L	T	L	G	I	L	V	E	P	M	L	I	L	S	L	L	V	L	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E
Template Known Secondary structure																								T		S	B																					T	S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	S	T	H	I	E	M	I	S	N	T	L	A	M	G	W	N	S	P	L	T	T	V	L	A	L	L	A	C	G	F	A	C	F	I	E	M	G	K	I	P	F	D	V	A	E	A	E	Q	E	L	Q	E	G	P	L	T	E	Y	S	G	A	G	L	A	L	A	K	W	G	L	G	L	K	Q	V	V	M
Query Conservation
Alig confidence									.	.	.	.	.	.	.																																													.
Template Conservation									.	.	.	.	.	.	.																																													.
Template Sequence		R	I	H	T	R	D	M	.	.	.	.	.	.	.	R	M	M	G	G	L	W	S	K	M	K	W	L	P	A	L	S	L	F	F	A	V	A	T	L	G	M	P	G	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	.	Q	V	V	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y	S
Template Known Secondary structure							B	G	.	.	.	.	.	.	.	G	G			S	G	G	G	T		S	S													S			T	T	S															.
Template Predicted Secondary structure									.	.	.	.	.	.	.																																													.
Template SS confidence
		365	.	.	.	.	370	.								.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	F	V	A	L	F	L	P	F	G	R	A	Q	E	L	S	L	A	C	L	L	T	S	L	V	V	T	L	L	K	V	L	L	I	F	V	L	A	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	M	L	H	R	A	Y	F	G	K	A	K	S	Q	I	A	S	Q	E	L	P	G	M	S	L	R	E	L	F	M	I	L	L	L	V	V	L	L	V	L	L
Template Known Secondary structure										S	S	S	S		S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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