Job Description P77454 Confidence 97.67% Date Thu Jan 5 12:29:25 GMT 2012 Rank 13 Aligned Residues 267 % Identity 16% Template d1rp5a4 SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 3.00

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																							.	.	.	60	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	Q	Q	A	V	D	Q	A	Y	T	Q	F	H	S	L	N	G	G	Q	N	A	D	Y	I	P	F	L	A	N	V	P	G	Q	L	A	A	V	A	I	V	T	C	D	G	N	V	Y	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	D	Y	R	F	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	M	T	A	T	L	V	S	A	K	T	G	E	I	L	A	T	T	Q	R	P	T	F	D	A	D	T	K	E	G	I	T	E	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E
Template Known Secondary structure																					S	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T		B								S			B	T	T	T	T	B	T			S	S						T	T	T	S			B
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.														.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																		.	.																																																										.	.
Query SS confidence																		.	.																																																										.	.
Query Sequence		L	E	S	I	S	K	V	C	T	L	A	L	A	L	E	D	.	.	V	G	P	Q	A	V	Q	D	K	I	G	A	D	P	T	G	L	P	F	N	S	V	I	A	L	E	L	H	G	G	K	P	L	S	P	L	V	N	A	G	A	I	A	T	T	S	L	I	N	A	E	N	V	E	Q	R	W	.	.	Q	R	I
Query Conservation																		.	.																																																										.	.
Alig confidence																		.	.																									.	.																																.	.
Template Conservation																																												.	.
Template Sequence		P	G	S	T	M	K	V	M	M	L	A	A	A	I	D	N	N	T	F	P	G	G	E	V	F	N	S	S	E	L	K	I	A	D	A	T	I	R	D	W	D	V	.	.	N	E	G	L	T	G	G	R	M	M	T	F	S	Q	G	F	A	H	S	S	N	V	G	M	T	L	L	E	Q	K	M	G	D	A	T	W
Template Known Secondary structure			G	G	G	G												T				T	T						S					T	T									.	.		T	T	S		S													T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure										.																																				.
Query SS confidence										.																																				.
Query Sequence		L	H	I	Q	Q	Q	L	A	.	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	.	C	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L	A	T	L	G	A	T	L	A	A	G	G	V
Query Conservation										.																																				.
Alig confidence										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.														.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		L	D	Y	L	N	R	F	K	F	G	V	P	T	R	F	G	L	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	A	G	Q	L	P	A	D	N	I	V	N	I	A	M	S	A	F	G	Q	.	G	I	S	V	T	Q	T	Q	M	L	R	A	F	T	A	I	A	N	D	G	V
Template Known Secondary structure								T	T	T	T	S					S		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B				S	S								T	T	T		.	S		B	B														T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.																			.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		218																						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.														.	.	.									.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.														.	.	.									.	.
Query Sequence		N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	T	H	K	R	V	L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	.	.	.	.	.	.	.	.	L	Y	G	R	S	G	D	W	A	Y	R	V	G	.	.	.	L	P	G	K	S	G	V	G	.	.
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.														.	.	.									.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.														.	.	.									.	.
Template Conservation
Template Sequence		M	L	E	P	K	F	I	S	A	L	Y	D	P	N	D	Q	S	V	R	K	S	Q	K	E	I	V	G	N	P	V	S	K	E	A	A	S	V	T	R	D	H	M	V	M	V	G	T	D	P	T	Y	G	T	M	Y	N	H	S	T	G	K	A	T	V	N	V	P	G	Q	N	V	A	L	K	S	G	T	A	E	I
Template Known Secondary structure						B								T	T	T	T														S																			T	T	T		T	T	B		T	T	T	S	S	B	S	S		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
																		264	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	L	A	V	V	P	G	.	.	.	V	M	G	I	A	A	F	S	P	P	L	D	E	D	G	N	S	V	R	G	Q	K	M	V	A	S	V	A	K	Q	L	G	Y	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		A	D	E	K	N	G	G	Y	L	T	G	S	T	N	N	I	F	S	V	V	S	M	H	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q	P	E	H	Y	S	G	I	Q	L	G	E	F	A	N	P	I	L	E	R	A	S	A	M	K
Template Known Secondary structure		B		T	T	T	S	S	B			S	S	S	S										S	T	T	S		S									S		S	S																					T
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions