Job Description P77454 Confidence 98.04% Date Thu Jan 5 12:29:25 GMT 2012 Rank 8 Aligned Residues 260 % Identity 18% Template c3oc2A_ PDB info PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa Resolution 1.97 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																						.	.	60	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	Q	Q	A	V	D	Q	A	Y	T	Q	F	H	S	L	N	G	G	Q	N	A	D	Y	I	P	F	L	A	N	V	P	G	Q	L	A	A	V	A	I	V	T	C	D	G	N	V	Y	S	A	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Y	R	F	A	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I	D	V	F	E	P
Template Known Secondary structure																			T				.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T		B								S				T	T			T	T															B	B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.														.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		E	S	I	S	K	V	C	T	L	A	L	A	L	E	D	V	G	P	Q	A	V	Q	D	K	I	G	A	D	P	T	G	L	P	F	N	S	V	I	A	L	E	L	H	G	G	K	P	L	S	P	L	V	N	A	G	A	I	A	T	T	S	L	I	N	A	E	N	V	E	Q	R	W	.	.	Q	R	I	L	H	I
Query Conservation																																																																										.	.
Alig confidence																.																									.	.																																.	.
Template Conservation																.																									.	.
Template Sequence		G	S	T	V	K	P	F	S	M	S	A	A	L	A	.	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	Y	T	I	.	.	R	D	V	S	R	N	S	R	Q	L	D	L	T	G	I	L	I	K	S	S	N	V	G	I	S	K	I	A	F	D	I	G	A	E	S	I	Y	S	V
Template Known Secondary structure		G	G	G	G											.	T	T	S			T	T						T	T	S					T	T				.	.			S					S										T	T
Template Predicted Secondary structure																.																									.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		143	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure							.																																					.	.	.	.																																		.
Query SS confidence							.																																					.	.	.	.																																		.
Query Sequence		Q	Q	Q	L	A	.	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	C	.	.	.	.	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L	A	T	L	G	A	T	L	A	A	G	G	.
Query Conservation							.																																					.	.	.	.																																		.
Alig confidence							.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.													.																					.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		M	Q	Q	V	G	L	G	Q	D	T	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y	G	Y	.	G	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K
Template Known Secondary structure					T	T	T	T	S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T					B					S	S											T	T		.	S		B	B														T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.																			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
											217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.						.	.	.	.	.	.	270	.				.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																											.	.						.	.	.	.	.									.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																											.	.						.	.	.	.	.									.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	V	N	P	L	T	H	K	R	V	L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	L	Y	G	R	S	G	D	W	A	Y	R	V	G	L	P	G	.	.	K	S	G	V	G	.	.	.	.	.	G	G	I	L	A	V	V	P	.	.	.	G	V	M	G	I	A
Query Conservation		.	.	.	.	.	.	.	.	.																																											.	.						.	.	.	.	.									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																											.	.						.	.	.	.	.									.	.	.
Template Conservation
Template Sequence		S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	Q	G	G	V	F	R	A	Q	V	P	G	Y	H	A	A	G	K	S	G	T	A	R	K	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V
Template Known Secondary structure						B	S	B			S	S								S																		S	T	T	S		G	G	G			T	T	S																							T	T	S
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	S	P	P	L	D	E	D	G	N	S	V	R	G	Q	K	M	V	A	S	V	A	K	Q	L
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence		V	V	.	.	.	I	D	E	P	F	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A
Template Known Secondary structure				.	.	.										T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		520	.				.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions