Job Description P77454 Confidence 97.78% Date Thu Jan 5 12:29:25 GMT 2012 Rank 10 Aligned Residues 256 % Identity 20% Template c3lo7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis Resolution 2.05 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	Q	Q	A	V	D	Q	A	Y	T	Q	F	H	S	L	N	G	G	Q	N	A	D	Y	I	P	F	L	A	N	V	P	G	Q	L	A	A	V	A	I	V	T	C	D	G	N	V	Y	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	Q	Q	A	G	W	D	A	M	Q	Q	G	C	Y	G	P	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	A	V	V	A	L	E	P	S	T	G	K	I	L	A	L	V	S	S	P	S	Y	D	P	N	L	L	A	S	H	N	P	E	V	Q	A	Q	A	W	Q	R	L	G	D	N	P
Template Known Secondary structure														B	T	T	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T		B								S								T		S																T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
									57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																														.
Query SS confidence		.	.	.	.	.	.	.																																														.
Query Sequence		.	.	.	.	.	.	.	D	S	D	Y	R	F	A	L	E	S	I	S	K	V	C	T	L	A	L	A	L	E	D	V	G	P	Q	A	V	Q	D	K	I	G	A	D	P	T	G	L	P	F	N	S	V	.	I	A	L	E	L	H	G	G	K	P	L	S	P	L	V	N	A	G	A	I	A	T	T	S	L	I	N
Query Conservation		.	.	.	.	.	.	.																																														.
Alig confidence		.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	P	L	T	N	R	A	I	S	E	T	Y	P	P	G	S	T	F	K	V	I	T	T	A	A	A	L	A	A	.	.	.	.	.	.	.	.	.	.	G	A	T	E	T	E	Q	L	T	A	A	P	T	I	P	L	E	N	Y	P	C	G	D	E	P	T	V	S	L	R	E	A	F	V	K	S	C	N	T	A
Template Known Secondary structure		T		T	T	S		T	T	T	S			B			G	G	G	G											T	.	.	.	.	.	.	.	.	.	.	T			T	T							S	B				B					S	S	S	S										T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		129	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure										.	.												.
Query SS confidence										.	.												.
Query Sequence		A	E	N	V	E	Q	R	W	.	.	Q	R	I	L	H	I	Q	Q	Q	L	A	.	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	C	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L
Query Conservation										.	.												.
Alig confidence										.	.												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Sequence		F	V	Q	L	G	I	R	T	G	A	D	A	L	R	S	M	A	R	A	F	G	L	D	S	P	P	R	P	T	P	L	Q	V	A	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	G	P	I	P	.	D	S	A	A	L	G	M	T	S	I	G	Q	K	D	V	A	L	T	P	L	A	N
Template Known Secondary structure																					T	T	T	T	S					S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B						.	S								T	T	T		T	T		B	B
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.																.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.																						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Query Sequence		A	T	L	G	A	T	L	A	A	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	P	L	T	H	K	R	V	L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	L	Y	G	R	S	G	D	W	A	Y	R	V	G	L	P	G	.	.	K	S	G	V
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.															.	.
Template Conservation																																																												.	.
Template Sequence		A	E	I	A	A	T	I	A	N	G	G	I	T	M	R	P	Y	L	V	G	S	L	K	G	P	D	L	A	N	I	S	T	T	V	G	Y	Q	Q	R	R	A	V	S	P	Q	V	A	A	K	L	T	E	L	M	V	G	A	E	.	.	K	V	A	Q	Q	K	G	A	I	P	G	V	Q	I	A	S	K	T	G	T
Template Known Secondary structure										T	T	T						B	S							T	T																S																	.	.			S			T	T			T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		263													.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.									.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.									.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	L	A	V	V	P	.	.	.	G	V	M	G	I	A	A	F	.	.	.	.	S	P	P	L	D	E	D	G	N	S	V	R	G	Q	K	M	V	A	S	V	A	K	Q	L	G
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.									.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.									.	.	.									.	.	.	.
Template Conservation
Template Sequence		A	E	H	G	T	D	P	R	H	T	P	P	H	A	W	Y	I	A	F	A	P	A	Q	A	P	K	V	A	V	A	V	L	V	E	N	G	A	D	R	L	S	A	T	G	G	A	L	A	A	P	I	G	R	A	V	I	E	A	A	L	Q
Template Known Secondary structure					S	S		T	T	T	S											S	T	T	S										T	T				S	S	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions