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Job DescriptionP77454
Confidence96.03%DateThu Jan 5 12:29:25 GMT 2012
Rank33Aligned Residues238
% Identity15%Templatec3equB_
PDB info PDB header:biosynthetic proteinChain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAG. . . . . . . . . . . . . . . . . . . . . DSDYRFAL
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Template Sequence  RIQTLAYEELNKAVEYHQAK. . . . . . . . . . . . . AGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDXIEP
Template Known Secondary structure  TT
S.............TTT
BS


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B

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Query Sequence  ESISKVCTLALALED. . VGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATTSLINAENVEQRW. . QRIL
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Template Sequence  GSAIKPFVIAKALDAGKTDLNERLNTQPYKIGPSPV. . . . . . . . RDTHVYPSLDVRGIXQKSSNVGTSKLSARFGAEEXY
Template Known Secondary structure  GGGGTSS
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   141...... ..150.........160.........170.........180.........190.........200.........210.........
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Query Sequence  HIQQQLA. GEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNP
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Template Sequence  DFYHELGIGVRXHSGFPGETAGLLRNWR. . . . . . . . . . . . . . RWRPIEQATXSFGYG. LQLSLLQLARAYTALTHDGVLL
Template Known Secondary structure  TTTTS



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GG..............G

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Query Sequence  L. . . . . . . . . THKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPG. . KSGVG. . . . . . GGILAVVP. . . GVMGIAAF
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Template Sequence  PLSFEKQAVAPQGKRIFKETAREVRNLXVSVTEPGGTGTAGAVDGFDVGAKTGTARKNKHVATFIGFAPAKNPRVIVAVT
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BSB

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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