Job Description P77454 Confidence 96.03% Date Thu Jan 5 12:29:25 GMT 2012 Rank 33 Aligned Residues 238 % Identity 15% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																						.	.	.	60	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	Q	Q	A	V	D	Q	A	Y	T	Q	F	H	S	L	N	G	G	Q	N	A	D	Y	I	P	F	L	A	N	V	P	G	Q	L	A	A	V	A	I	V	T	C	D	G	N	V	Y	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	D	Y	R	F	A	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	Q	T	L	A	Y	E	E	L	N	K	A	V	E	Y	H	Q	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	T	V	V	V	L	D	A	R	T	G	E	I	L	A	L	A	N	T	P	A	Y	D	P	N	R	P	G	R	A	D	S	E	Q	R	R	N	R	A	V	T	D	X	I	E	P
Template Known Secondary structure																		T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T		B								S				T	T	S		T	T															B
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.														.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140
Predicted Secondary structure																	.	.																																																										.	.
Query SS confidence																	.	.																																																										.	.
Query Sequence		E	S	I	S	K	V	C	T	L	A	L	A	L	E	D	.	.	V	G	P	Q	A	V	Q	D	K	I	G	A	D	P	T	G	L	P	F	N	S	V	I	A	L	E	L	H	G	G	K	P	L	S	P	L	V	N	A	G	A	I	A	T	T	S	L	I	N	A	E	N	V	E	Q	R	W	.	.	Q	R	I	L
Query Conservation																	.	.																																																										.	.
Alig confidence																	.	.																				.	.	.	.	.	.	.	.																															.	.
Template Conservation																																						.	.	.	.	.	.	.	.
Template Sequence		G	S	A	I	K	P	F	V	I	A	K	A	L	D	A	G	K	T	D	L	N	E	R	L	N	T	Q	P	Y	K	I	G	P	S	P	V	.	.	.	.	.	.	.	.	R	D	T	H	V	Y	P	S	L	D	V	R	G	I	X	Q	K	S	S	N	V	G	T	S	K	L	S	A	R	F	G	A	E	E	X	Y
Template Known Secondary structure		G	G	G	G												T	S	S		S	S						S					T	T				.	.	.	.	.	.	.	.			S	S			S											T										T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.									.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		141	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		H	I	Q	Q	Q	L	A	.	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	C	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L	A	T	L	G	A	T	L	A	A	G	G	V	N	P
Query Conservation									.
Alig confidence									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		D	F	Y	H	E	L	G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	R	P	I	E	Q	A	T	X	S	F	G	Y	G	.	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	D	G	V	L	L
Template Known Secondary structure							T	T	T	T	S					S		T	T									G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G											T	T		S	.			B														T	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.															.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		220										.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.							.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																							.	.						.	.	.	.	.	.									.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																																							.	.						.	.	.	.	.	.									.	.	.
Query Sequence		L	.	.	.	.	.	.	.	.	.	T	H	K	R	V	L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	L	Y	G	R	S	G	D	W	A	Y	R	V	G	L	P	G	.	.	K	S	G	V	G	.	.	.	.	.	.	G	G	I	L	A	V	V	P	.	.	.	G	V	M	G	I	A	A	F
Query Conservation			.	.	.	.	.	.	.	.	.																																							.	.						.	.	.	.	.	.									.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																							.	.						.	.	.	.	.	.									.	.	.
Template Conservation
Template Sequence		P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T	A	R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	A	G	A	V	D	G	F	D	V	G	A	K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V	I	V	A	V	T
Template Known Secondary structure				B	S	B			S	S								S													T	T	T	S	T	T	S	S		G	G	G			T	T	S																							S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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