Job Description P77454 Confidence 97.55% Date Thu Jan 5 12:29:25 GMT 2012 Rank 15 Aligned Residues 217 % Identity 15% Template c3dwkC_ PDB info PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer Resolution 3.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.													.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		K	L	Q	Q	A	V	D	Q	A	Y	T	Q	F	H	S	L	N	G	G	Q	N	A	D	Y	I	P	F	L	A	N	V	P	G	Q	L	A	A	V	A	I	V	T	C	D	G	N	V	Y	S	A	.	.	.	.	.	.	.	.	.	.	.	.	G	D	S	D	Y	R	F	A	L	E	S	I	S	K	V	C	T	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	Q	K	T	L	Q	N	D	V	D	N	G	S	F	Y	K	N	K	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	Q	V	G	A	T	I	L	D	S	K	T	G	G	L	V	A	I	S	G	G	R	D	F	K	D	V	V	N	R	N	Q	A	T	D	P	H	P	T	G	S	S	L	K	P	F	L	A
Template Known Secondary structure															S			S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	T										T	T	T		B							S	T	T			T	T	T	S			T	T	T	S					G	G	G	G					T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.													.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.														.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	L	A	L	E	D	V	G	P	Q	A	V	Q	D	K	I	G	A	D	P	T	G	L	P	F	N	S	V	I	A	L	E	L	H	G	G	K	P	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	N	A	G	A	I	A	T	T	S	L	I	N	A	E	N	V	E	Q	R	W	Q	R	I
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	P	A	I	E	N	.	.	.	.	.	.	.	.	.	.	M	K	W	A	T	N	H	A	I	Q	D	E	S	S	Y	Q	V	D	G	S	T	F	R	N	Y	D	T	K	S	H	G	T	V	S	I	Y	D	A	L	R	Q	S	F	N	I	P	A	L	K	A	W	Q	S	V	K	Q	N	A	G	N	D	A	P
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	S				T	T	B						S			B	S	S	S		B				T	T															T	T																S		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		406	.	.	.	410	.	.											.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure										.																																																																							.
Query SS confidence										.																																																																							.
Query Sequence		L	H	I	Q	Q	Q	L	A	.	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	C	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L	A	T	L	G	A	T	L	A	A	G	G	V	.
Query Conservation										.																																																																							.
Alig confidence										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	F	A	A	K	L	G	L	N	Y	E	G	D	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	E	V	L	G	G	S	A	S	E	F	S	P	T	Q	L	A	S	A	F	A	A	I	A	N	G	G	T	Y
Template Known Secondary structure								T	T				S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T		T	T																T	T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.																																			.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
																				218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	L	T	H	K	R	V	L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	L	Y	G	R	S	G	D	W	A	Y	R	V	G	L	P	.	.	G	K	S	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	A	H	S	I	Q	K	V	V	T	R	D	G	E	T	I	E	Y	D	H	T	S	H	K	A	M	S	D	Y	T	A	Y	M	L	A	E	M	L	K	G	T	F	K	P	Y	G	S	A	Y	G	H	G	V	S	G	V	N	M	G	A	K	T	G	T	G	T	Y	G	A	E	T	Y	S	Q	Y	N	L	P	D
Template Known Secondary structure					B								S	S	S													S														T	T	S	S	T	T	S	T	T	T	T		S		S	S														T	T					T	T			T
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
							264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	G	I	L	A	V	V	P	G	V	M	G	I	A	A	F
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.										.
Template Conservation																.
Template Sequence		N	A	A	K	D	V	W	I	N	G	F	T	P	Q	.	Y	T	M	S	V	W
Template Known Secondary structure		T												S	S	.
Template Predicted Secondary structure																.
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.		.	.	.	.	620	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions