Job Description P77454 Confidence 94.51% Date Thu Jan 5 12:29:25 GMT 2012 Rank 47 Aligned Residues 240 % Identity 15% Template c2wuqA_ PDB info PDB header:transcription Chain: A: PDB Molecule:beta-lactamase regulatory protein blab; PDBTitle: crystal structure of blab protein from streptomyces cacaoi Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	N	K	L	Q	Q	A	V	D	Q	A	Y	T	Q	F	H	S	L	N	G	G	Q	N	A	D	Y	I	P	F	L	A	N	V	P	G	Q	L	A	A	V	A	I	V	T	C	D	G	N	V	Y	S	A	G	D	S	D	Y	R	F	A	L	E	S	I	S	K	V	C	T	L	A	L	A	L	E	D	V	G	P
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Sequence		N	S	E	S	L	L	R	E	L	R	D	A	L	H	E	G	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	S	F	L	V	R	D	L	Y	T	G	E	E	L	G	I	D	P	D	T	E	L	P	T	A	S	L	V	K	L	P	L	A	L	A	T	L	E	R	.	.	.
Template Known Secondary structure																	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T							S	T	T						G	G	G	G												.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.												120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		Q	A	V	Q	D	K	I	G	A	D	P	T	G	L	P	F	N	S	V	I	A	L	E	L	H	G	G	K	P	L	S	P	L	V	N	A	G	.	.	.	.	.	.	.	.	.	.	.	A	I	A	T	T	S	L	I	N	A	E	N	V	E	Q	R	W	.	.	.	.	.	.	Q	R	I	L	H	I	Q	Q	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	I	R	L	G	E	V	D	G	A	Q	Q	I	E	V	A	P	G	R	I	T	T	P	G	P	T	G	L	S	R	F	R	H	P	A	R	V	A	V	D	D	L	L	Y	L	S	T	S	V	S	D	G	T	A	S	D	A	L	F	E	I	T	P	P	A	Q	V	E	Q	M	V	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.			T	T	S	S		T	T												S	S	S			G	G	G	G		S	S																S													S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	C	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L	A	T	L	G	A	T	L	A	A	G	G	V	N	P	L	T	H	K	R	V
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		W	G	F	R	D	L	T	V	R	H	S	M	R	E	H	R	V	P	Q	L	D	V	A	R	A	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	R	A	F	V	D	L	L	E	A	L	W	A	P	.	.	.	.	V	L	T	G	P	A
Template Known Secondary structure		T	T			S							T	T				S	G	G	G		T	T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															G	G	.	.	.	.	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																.	.																.	.	.	.	.			.	.
Query SS confidence																																.	.																.	.	.	.	.			.	.
Query Sequence		L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	L	Y	G	R	S	G	D	W	A	Y	R	V	G	.	.	L	P	G	K	S	G	V	G	G	G	I	L	A	V	V	.	.	.	.	.	P	G	.	.	V	M	G	I	A	A	F	S	P	P	L	D	E	D	G	N	S	V	R	G	Q	K	M	V
Query Conservation																																.	.																.	.	.	.	.			.	.
Alig confidence																																.	.																.	.	.	.	.			.	.
Template Conservation
Template Sequence		L	P	P	E	P	A	A	R	L	R	E	L	M	A	A	N	L	L	R	H	R	L	A	P	D	F	A	S	D	A	A	T	W	S	S	K	T	G	T	L	L	N	L	R	H	E	V	G	V	V	E	H	A	D	G	Q	V	F	A	V	A	V	L	T	E	S	Q	V	P	A	D	S	Q	P	G	A	E	A	L	M
Template Known Secondary structure																T					S	S	S						B	T	T											T	T											T	T	S												S	S			S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	V	A	K	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	V	A	R	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions