Job Description P77454 Confidence 96.27% Date Thu Jan 5 12:29:25 GMT 2012 Rank 31 Aligned Residues 216 % Identity 17% Template c1mwuA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		69	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.
Predicted Secondary structure													.	.														.																																													.	.
Query SS confidence													.	.														.																																													.	.
Query Sequence		K	V	C	T	L	A	L	A	L	E	D	.	.	V	G	P	Q	A	V	Q	D	K	I	G	A	D	.	P	T	G	L	P	F	N	S	V	I	A	L	E	L	H	G	G	K	P	L	S	P	L	V	N	A	G	A	I	A	T	T	S	L	I	N	A	E	N	V	E	Q	R	W	.	.	Q	R	I	L	H	I	Q
Query Conservation													.	.														.																																													.	.
Alig confidence													.	.														.												.	.																																.	.
Template Conservation																																								.	.
Template Sequence		K	I	L	T	A	M	I	G	L	N	N	K	T	L	D	D	K	T	S	Y	K	I	D	G	K	G	W	Q	K	D	K	S	W	G	G	Y	N	V	.	.	T	R	Y	E	V	V	N	G	N	I	D	L	K	Q	A	I	E	S	S	D	N	I	F	F	A	R	V	A	L	E	L	G	S	K	K	F	E	K	G	M
Template Known Secondary structure													T	S			T	T							S	S				S	S	G	G	G	T	T				.	.			S	S														T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.			.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		144	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure						.																																																																						.	.	.	.	.	.
Query SS confidence						.																																																																						.	.	.	.	.	.
Query Sequence		Q	Q	L	A	.	G	E	Q	V	A	L	S	D	E	V	N	Q	S	E	Q	T	T	N	F	H	N	R	A	I	A	W	L	L	Y	S	A	G	Y	L	Y	C	D	A	M	E	A	C	D	V	Y	T	R	Q	C	S	T	L	L	N	T	I	E	L	A	T	L	G	A	T	L	A	A	G	G	.	.	.	.	.	.
Query Conservation						.																																																																						.	.	.	.	.	.
Alig confidence						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	L	G	V	G	E	D	I	P	S	D	Y	P	F	Y	N	A	Q	I	S	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	N	E	I	L	L	A	D	S	G	Y	G	Q	G	E	I	L	I	N	P	V	Q	I	L	S	I	Y	S	A	L	E	N	N	G	N	I	N	A	P	H
Template Known Secondary structure					T	T	T	S				S	S	S						B	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S								T	T	T		S	S		B	B											G	G	G	T	T	T						B
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.																	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
							217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure		.	.	.	.	.																																										.	.					.	.	.													.	.	.
Query SS confidence		.	.	.	.	.																																										.	.					.	.	.													.	.	.
Query Sequence		.	.	.	.	.	V	N	P	L	T	H	K	R	V	L	Q	A	D	N	V	P	Y	I	L	A	E	M	M	M	E	G	L	Y	G	R	S	G	D	W	A	Y	R	V	G	L	P	.	.	G	K	S	G	.	.	.	V	G	G	G	I	L	A	V	V	P	G	V	.	.	.	M	G	I	A	A	F	S	P	P	L
Query Conservation		.	.	.	.	.																																										.	.					.	.	.													.	.	.
Alig confidence		.	.	.	.	.																										.																.	.					.	.	.													.	.	.
Template Conservation																																.
Template Sequence		L	L	K	D	T	K	N	K	V	W	K	K	N	I	I	S	K	E	N	I	N	L	L	T	D	G	M	Q	Q	V	.	V	N	K	T	H	K	E	D	I	Y	R	S	Y	A	N	L	I	G	K	S	G	T	A	E	L	Q	I	G	W	F	I	S	Y	D	K	D	N	P	N	M	M	M	A	I	N	V	K	D	V
Template Known Secondary structure			B	S	S	S							S		S	S																.			T	T	T	T	T	T	T			T	T	S																					T	T	S		S
Template Predicted Secondary structure																																.
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.		.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	D	G	N	S	V	R	G	Q	K	M	V	A	S	V	A	K	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	K	G	M	A	S	Y	N	A	K	I	S	G	K	V	Y	D	E	L
Template Known Secondary structure		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions