Job Description P05804 Confidence 69.20% Date Thu Jan 5 10:58:55 GMT 2012 Rank 243 Aligned Residues 98 % Identity 17% Template d1pgsa2 SCOP info Nucleoplasmin-like/VP (viral coat and capsid proteins) PHM/PNGase F Glycosyl-asparaginase Resolution 1.80

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.																		.	.	.	.	.	.	.	100	.	.	.	.																													.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	V	F	I	P	K	G	W	A	G	Q	R	I	V	L	R	F	D	A	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Y	G	K	V	W	V	N	N	Q	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	I	Q	L	P	T	N	T	E	K	A	Y	L	R	T	T	I	S	G	W	G	H	A	K	P	Y	D	A	G	S	R	G	C	A	E	W	C	F	R	T	H	T	I	A	I	N	N	A	N	T	F	Q	H	Q	L	G	A	L	G	C	S	A	N	P	I	N	N	Q	S	P	G	N	W	T	P	D	R	A	G
Template Known Secondary structure								T	T		S																			T	T	T					T	T	S									T	T													G	G	G		S					T	T	S			S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	Q	G	G	Y	T	P	F	E	A	D	V	T	P	Y	V	I	A	G	K	S	V	R	I	T	V	C	V	N	N	E	L	N	W	Q	T	I	P	P	G	M	V	I	T	D	E	N	G	K	K	K	Q	S	Y	F	H	D	F	F	N	Y	A	G	I	H	R	S	V	M	L	Y	T	T	P	N	T	W	V	D
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	C	P	G	M	A	V	P	T	R	I	D	V	L	N	N	S	L	T	G	S	T	F	S	Y	E	Y	K	F	Q	S	W	T	N	N	G	T	N	G	D	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	I	S	S	F	V	I	A	K	S	N	T	P	I	S
Template Known Secondary structure				T	T	S											G	G	G	T	T	S															S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																							.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		186	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	T	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	V	V	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions