Return to main results Retrieve Phyre Job Id

Job DescriptionP05804
Confidence82.42%DateThu Jan 5 10:58:55 GMT 2012
Rank202Aligned Residues129
% Identity18%Templated1j0ha3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   307..310.........320........ .330.... .....340.........350.......
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Query Sequence  DNVLMVHDHALMDWIGANSYRT. . . . . . . . . SHYPYA. . . . . . . . . . . . . . . EEMLDWADEHGIVVIDETAAVGF. . . . .
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Template Sequence  DLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFA
Template Known Secondary structure 
TT





SSSS

S
S
TTT

TT


SB

TT
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   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   358.360.........370.........380.........390.........400.........410..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . NLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIAN
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Template Sequence  PFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREF. . . . DIDGWRLDV
Template Known Secondary structure  GGG
TTGGGB
BSSSS


SSS
SB
BSTT
TTSBBB
TTS....


TT
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   254.....260.........270.........280.........290.........300.........310.........320 .........
 
   413......420.........430.........440...
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Query Sequence  EPDTRPQGAREYFAPLAEATRKLDPTRPITC
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Template Sequence  ANEID. . . . HEFWREFRQEVKALKPDVYILG
Template Known Secondary structure  GGGS
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TT
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   330.... .....340.........350......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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