Phyre 2 alignment of P05804 with c3thdD

Job Description P05804
Confidence 99.93% Date Thu Jan 5 10:58:55 GMT 2012

Rank 36 Aligned Residues 308

% Identity 15% Template c3thdD_

PDB info PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin

Resolution 1.79 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	272	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.						330	.	.	.	.
Predicted Secondary structure						.	.																																																						.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																						.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query Sequence	R	S	V	A	V	.	.	K	G	E	Q	F	L	I	N	H	K	P	F	Y	F	T	G	F	G	R	H	E	D	A	D	L	R	G	K	G	F	D	N	V	L	M	V	H	D	H	A	L	M	D	W	I	G	A	N	S	Y	R	T	S	.	.	.	.	.	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																																						.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																							.	.	.	.	.	.																										.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.
Template Sequence	R	M	F	E	I	D	Y	S	R	D	S	F	L	K	D	G	Q	P	F	R	Y	I	S	G	S	I	H	Y	S	.	.	.	.	.	.	R	V	P	R	F	Y	W	K	D	R	L	L	K	M	K	M	A	G	L	N	A	I	Q	T	Y	V	P	W	N	F	H	E	P	W	P	G	Q	Y	Q	F	S	E	D	H	D
Template Known Secondary structure							T	T	T	T					T	T												G	G	.	.	.	.	.	.	G	S		G	G	G											T	T		S													S	B	T	T	B				S	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.

		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.						.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure	.																																																																	.	.	.	.	.
Query SS confidence	.																																																																	.	.	.	.	.
Query Sequence	.	E	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L	G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	.	.	.	.	.	D	K	N	H	P	S	V	V	M	W
Query Conservation	.																																																																	.	.	.	.	.
Alig confidence	.																																																																	.	.	.	.	.
Template Conservation
Template Sequence	V	E	Y	F	L	R	L	A	H	E	L	G	L	L	V	I	L	R	P	G	P	Y	I	C	A	E	W	E	M	G	G	L	P	A	W	L	L	E	K	E	S	I	L	L	R	S	S	D	P	D	Y	L	A	A	V	D	K	W	L	G	V	L	L	P	K	M	K	P	L	L	Y	Q	N	G	G	P	V	I	T	V
Template Known Secondary structure											T	T									S				T	T	B	G	G	G	G			G	G	G	G	G	S	T	T			S	S	S																					G	G	G	B	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

	409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	I	A	N	E	P	D	T	R	P	Q	G	A	R	E	Y	F	A	P	L	A	E	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	V	M	F	C	D	A	H	T	D	T	I	S	D	L	F	D	V	L	C	L	N	R	Y	Y	G	W	Y	V	Q	S	G	D	L	E	T	A	E	K	V	L	E	K	E
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	V	E	N	E	Y	G	S	Y	F	A	C	D	F	D	Y	L	R	F	L	Q	K	R	F	R	H	H	L	G	D	D	V	V	L	F	T	T	D	G	A	H	K	T	F	L	K	C	G	A	L	Q	G	L	Y	T	T	V	D	F	G	T	G	.	.	.	.	.	.	.	.	.	.	.	S	N	I	T	D	A	F
Template Known Secondary structure			S	S		G	G	G	S	S																				S	S	S								S	S										T	T	S								T	T	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.												.	.	.	.	250	.	.

	489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.			.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence	L	L	A	W	Q	E	K	L	H	Q	P	I	I	I	T	E	Y	G	V	D	T	L	A	G	L	H	S	M	Y	T	D	M	W	S	E	E	Y	Q	C	A	W	L	D	M	Y	H	R	V	F	D	.	.	R	V	S	A	V	V	G	E	Q	V	W	N	F	A	D	F	A	T	S	Q	G	I	L	R	V	G	G	N
Query Conservation																																																			.	.
Alig confidence																																	.																		.	.
Template Conservation																																	.
Template Sequence	L	S	Q	R	K	C	E	P	K	G	P	L	I	N	S	E	F	Y	T	G	W	L	D	H	W	G	Q	P	H	S	T	I	.	K	T	E	A	V	A	S	S	L	Y	D	I	L	A	R	G	A	S	V	N	L	Y	M	F	I	G	G	T	N	F	A	Y	W	N	G	A	N	S	P	Y	A	A	Q	P	T	S	Y
Template Known Secondary structure								S	S	S									S	S					T	T	S						.															T	T								S	B			B			T	T		B				T	T	T					S	B
Template Predicted Secondary structure																																	.
Template SS confidence
	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

	567	.		.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence	K	K	.	G	I	F	T	R	D	R	K	P	K	S	A	A	F	L	L	Q	K	R	W	T	G	M	N	F	G	E	K	P
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence	D	Y	D	A	P	L	S	E	A	G	D	L	T	E	K	Y	F	A	L	R	N	I	I	Q	K	F	E	K	V	P	E	G
Template Known Secondary structure		T	T		S	B		T	T			B													T	T	S					S
Template Predicted Secondary structure
Template SS confidence
	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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