Job Description P05804 Confidence 93.44% Date Thu Jan 5 10:58:55 GMT 2012 Rank 172 Aligned Residues 278 % Identity 10% Template c3k1dA_ PDB info PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv Resolution 2.33 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.												.	330	.	.	.	.																.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	L	M	V	H	D	H	A	L	M	D	W	I	G	A	N	S	Y	R	T	.	.	.	.	.	.	.	.	.	.	.	S	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	L	A	R	E	L	T	D	Y	I	V	D	Q	G	F	T	H	V	E	L	L	P	V	A	E	H	P	F	A	G	S	W	G	Y	Q	V	T	S	Y	Y	A	P	T	S	R	F	G	T	P	D	D	F	R	A	L	V	D	A	L	H	Q	A	G	I	G	V	I	V	D	W	V	P	A	H	F	P	K	D	A
Template Known Secondary structure																T		S					S						S		G	G	G	T	T		S		S							G	G	G																T	T									T	T						T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		362	.	.	.	.															.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.																.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	G	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	N	H	P	S	V	V	M	W	S	I	A	N
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	L	G	R	F	D	G	T	P	L	Y	E	H	S	D	P	K	R	G	E	Q	L	D	W	G	T	Y	V	F	D	F	G	R	P	E	V	R	N	F	L	V	A	N	A	L	Y	W	L	Q	E	F	H	I	D	G	L	R	V	D	A	V	A	S	M	L	Y	L	D	Y	S	R	P	E	G	G	W	T	P	N
Template Known Secondary structure		T	T	T	T	T	T	T	S	S			S	B						S	S	S	T	T							B		T	T	S																		S										T					B							S	S			S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		413	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.						.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure									.																																																							.	.	.	.	.
Query SS confidence									.																																																							.	.	.	.	.
Query Sequence		E	P	D	T	R	P	Q	.	G	A	R	E	Y	F	A	P	L	A	E	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	V	M	F	C	D	A	H	T	D	T	I	S	D	L	F	D	V	L	C	L	N	R	Y	Y	G	W	Y	V	.	.	.	.	.	Q	S	G	D	L	E	T	A	E	K	V	L	E
Query Conservation									.																																																							.	.	.	.	.
Alig confidence									.																																																							.	.	.	.	.
Template Conservation
Template Sequence		V	H	G	G	R	E	N	L	E	A	V	Q	F	L	Q	E	M	N	A	T	A	H	K	V	A	P	G	I	V	T	I	A	E	E	S	T	P	W	S	G	V	T	R	P	T	N	I	G	G	L	G	F	S	M	K	W	N	M	G	W	M	H	D	T	L	D	Y	V	S	R	D	P	V	Y	R	S	Y	H	H	H
Template Known Secondary structure			S	S		S	B																			S	T	T									S	S				T	T	S		G	G	G	T					S																	S		G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		K	E	L	L	A	W	Q	E	K	L	H	Q	P	I	I	I	T	E	.	Y	G	V	D	T	L	A	G	L	H	S	M	Y	T	D	M	W	S	E	E	Y	Q	C	A	W	L	D	M	Y	H	R	V	F	D	R	V	S	A	V	V	G	E	Q	V	W	N	F	A	D	F	A	T	S	Q	G	I	L	R	V	G	G
Query Conservation																				.
Alig confidence																				.																																									.	.
Template Conservation																																																													.	.
Template Sequence		E	M	T	F	S	M	L	Y	A	F	S	E	N	Y	V	L	P	L	S	H	D	E	V	V	H	G	K	G	T	L	W	G	R	M	P	G	N	N	H	V	K	A	A	G	L	R	S	L	L	A	Y	Q	W	A	H	P	G	K	Q	.	.	L	L	F	M	G	Q	E	F	G	Q	R	A	E	W	S	E	Q	R	G
Template Known Secondary structure					G	G	G	G	T	T	T	S	S								G	G	G	S	S	T	T	S							S		S	S																		S	S	S			.	.				T	T	G	G	G	T			S				T	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570			.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	K	G	I	F	T	R	D	R	K	P	K	S	A	A	F	L	L	Q	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	W	F	Q	L	D	E	N	G	F	S	N	G	I	Q	R	L	V	R	D	I
Template Known Secondary structure				G	G	G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions