Phyre 2 alignment of P05804 with c3emzA

Job Description P05804
Confidence 99.78% Date Thu Jan 5 10:58:55 GMT 2012

Rank 62 Aligned Residues 272

% Identity 15% Template c3emzA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase; PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative

Resolution 2.08 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.														.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																										.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	D	A	D	L	R	G	K	G	F	D	N	V	L	M	V	H	D	H	A	L	M	D	W	I	.	G	A	N	S	Y	R	T	S	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L	G
Query Conservation																										.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	N	S	F	K	I	G	A	A	V	H	T	R	M	L	Q	T	E	G	E	F	I	A	K	H	Y	N	S	V	T	A	E	N	Q	M	K	F	E	E	V	H	P	R	E	H	E	Y	T	F	E	A	A	D	E	I	V	D	F	A	V	A	R	G	I	G	V	R	G	H	T	L	V	W	H	N	Q	T	P	A	W
Template Known Secondary structure	T	T	T																								S					S	S	T	T	S						S	B	T	T	B															T	T	T								S	B		S	S	S			G	G
Template Predicted Secondary structure
Template SS confidence
	13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.

	363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.													.	.	.	.	.	.	.	430
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	D	K	N	H	P	S	V	V	M	W	S	I	A	N	E	P	D	T	R	P	Q	G	A	R	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	F	A	P	L	A	E
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																									.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																									.	.
Template Sequence	M	F	E	D	A	S	G	G	T	.	.	.	.	.	.	.	A	S	R	E	M	M	L	S	R	L	K	Q	H	I	D	T	V	V	G	R	Y	K	D	Q	.	.	I	Y	A	W	D	V	V	N	E	A	I	E	D	K	T	D	L	I	M	R	D	T	K	W	L	R	L	L	G	E	D	Y	L	V	Q	A	F	N
Template Known Secondary structure	G	G	B		T	T	S	S	B	.	.	.	.	.	.	.																					T	T	T	T	.	.		S									B		S	S	T	T			B									T		T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.																									.	.
Template SS confidence
	93	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450												.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	V	M	F	C	D	.	.	.	.	.	.	.	.	.	.	.	A	H	T	D	T	I	S	D	L	F	D	V	L	C	L	N	R	Y	Y	G	W	Y	V	Q	S	G	D	L	E	T	A	E	K	V	L	E	K	E	L	L	A	W	Q	E	K	L	H	Q	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																								.	.															.	.	.	.	.
Template Conservation																																																							.	.															.	.	.	.	.
Template Sequence	M	A	H	E	A	D	P	N	A	L	L	F	Y	N	D	Y	N	E	T	D	P	V	K	R	E	K	I	Y	N	L	V	R	S	L	L	D	Q	G	A	P	V	H	G	I	G	M	Q	G	H	W	N	I	H	G	.	.	P	S	M	D	E	I	R	Q	A	I	E	R	Y	A	.	.	.	.	.	S	L	D	V	Q
Template Known Secondary structure							T	T	S							S	S		S	S																		T														T	T	B	.	.	S														.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																							.	.															.	.	.	.	.
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.

	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.					.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.			.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure																								.	.	.	.																			.														.	.
Query SS confidence																								.	.	.	.																			.														.	.
Query Sequence	I	I	I	T	E	Y	G	V	D	T	L	A	G	L	H	S	M	Y	T	D	M	W	S	.	.	.	.	E	E	Y	Q	C	A	W	L	D	M	Y	H	R	V	F	D	R	V	.	S	A	V	V	G	E	Q	V	W	N	F	A	D	.	.	F	A	T	S	Q	G	I	L	R	V	G	G	N	K	K	G	I	F	T
Query Conservation																								.	.	.	.																			.														.	.
Alig confidence																								.	.	.	.																			.														.	.
Template Conservation
Template Sequence	L	H	V	T	E	L	D	L	S	V	F	R	H	E	D	Q	R	T	D	L	T	E	P	T	A	E	M	A	E	L	Q	Q	K	R	Y	E	D	I	F	G	L	F	R	E	Y	R	S	N	I	T	S	V	T	F	W	G	V	A	D	N	Y	T	W	L	D	N	F	P	V	R	G	R	K	N	W	P	F	V	F	D
Template Known Secondary structure										S	S		T	T							S	S																							T	T	T	T							S	S	S	S	T	T			G	G	G	S	S	S	S	T	T						S	S	B
Template Predicted Secondary structure
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	573	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	D	R	K	P	K	S	A	A	F	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	E	L	Q	P	K	D	S	F	W	R	I
Template Known Secondary structure	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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