Phyre 2 alignment of P05804 with c3d3aA

Job Description P05804
Confidence 99.87% Date Thu Jan 5 10:58:55 GMT 2012

Rank 45 Aligned Residues 298

% Identity 12% Template c3d3aA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.																	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	S	V	A	V	K	G	E	Q	F	L	I	N	H	K	P	F	Y	F	T	G	F	G	R	H	E	D	A	D	L	R	G	K	G	F	D	N	V	L	M	V	H	D	H	A	L	M	D	W	I	G	A	N	S	Y	R	T	S	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence	G	T	F	E	V	G	K	N	T	F	L	L	N	G	E	P	F	V	V	K	A	A	E	I	H	Y	P	.	.	.	.	.	.	R	I	P	K	E	Y	W	E	H	R	I	K	X	C	K	A	L	G	X	N	T	I	C	L	Y	V	F	W	N	F	H	E	P	E	E	G	R	Y	D	F	A	G	Q	K	D	I	A
Template Known Secondary structure							S	S	S				T	T												G	G	.	.	.	.	.	.	G	S		G	G	G												T															S	S	T	T					S	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
	26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

	336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.						.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L	G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	.	.	.	.	.	D	K	N	H	P	S	V	V	M	W	S	I
Query Conservation																																																																.	.	.	.	.
Alig confidence																																																																.	.	.	.	.
Template Conservation
Template Sequence	A	F	C	R	L	A	Q	E	N	G	X	Y	V	I	V	R	P	G	P	Y	V	C	A	E	W	E	X	G	G	L	P	W	W	L	L	K	K	K	D	I	K	L	R	E	Q	D	P	Y	Y	X	E	R	V	K	L	F	L	N	E	V	G	K	Q	L	A	D	L	Q	I	S	K	G	G	N	I	I	X	V	Q	V
Template Known Secondary structure									T	T									S				T	T	B	G	G	G	G			G	G	G	G	G	S	T	T			S	S	S																					G	G	G	B	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

	411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	E	P	D	T	R	P	Q	G	A	R	E	Y	F	A	P	L	A	E	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	V	M	F	C	D	A	H	T	D	T	I	S	D	L	F	D	V	L	C	L	N	R	Y	Y	G	W	Y	V	Q	S	G	D	L	E	T	A	E	K	V	L	E	K	E	L	L
Query Conservation
Alig confidence									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	N	E	Y	G	A	F	G	.	I	D	K	P	Y	I	S	E	I	R	D	X	V	K	Q	A	G	F	T	G	V	P	L	F	Q	C	D	W	N	S	N	F	E	N	N	A	L	D	D	L	L	W	T	I	N	F	G	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	I	D	E	Q	F	K	R
Template Known Secondary structure	S	S		G	G	G	T		.																	T			S	S								T	T	T	G	G	G	T			T	T	S								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.														.	.	.	240	.	.	.	.	.

	491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.			.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence	A	W	Q	E	K	L	H	Q	P	I	I	I	T	E	Y	G	V	D	T	L	A	G	L	H	S	M	Y	T	D	M	W	S	E	E	Y	Q	C	A	W	L	D	M	Y	H	R	V	F	D	.	.	R	V	S	A	V	V	G	E	Q	V	W	N	F	A	D	F	A	T	S	Q	G	I	L	R	V	G	G	N	K	K
Query Conservation																																																	.	.
Alig confidence																															.																		.	.
Template Conservation																															.
Template Sequence	L	K	E	L	R	P	D	T	P	L	X	C	S	E	F	W	S	G	W	F	D	H	W	G	A	K	H	E	T	R	.	S	A	E	E	L	V	K	G	X	K	E	X	L	D	R	N	I	S	F	S	L	Y	X	T	H	G	G	T	S	F	G	H	W	G	G	A	N	F	P	N	F	S	P	T	C	T	S	Y	D
Template Known Secondary structure						T	T	S										S				B	T	T	S						.														T	T	T								S	B			B			T	T		B				T	T	T	T			B		S	B
Template Predicted Secondary structure																															.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

			569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure	.	.
Query SS confidence	.	.
Query Sequence	.	.	G	I	F	T	R	D	R	K	P	K	S	A	A	F	L	L	Q	K	R	W	T	G
Query Conservation	.	.
Alig confidence	.	.
Template Conservation
Template Sequence	Y	D	A	P	I	N	E	S	G	K	V	T	P	K	Y	L	E	V	R	N	L	L	G	N
Template Known Secondary structure	T	T		S	B		T	T	S														T	T
Template Predicted Secondary structure
Template SS confidence
	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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