Job Description P05804 Confidence 98.79% Date Thu Jan 5 10:58:55 GMT 2012 Rank 149 Aligned Residues 295 % Identity 10% Template c3clwF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from bacteroides2 fragilis Resolution 2.20 Å

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		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320												.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	F	Y	F	T	G	F	G	R	H	E	D	A	D	L	R	G	K	G	F	D	N	V	L	M	V	H	D	H	A	L	M	D	W	.	.	.	.	.	.	.	.	.	.	.	I	G	A	N	S	Y	R	T	S	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	I	D	N	F	S	A	S	D	A	W	R	C	A	F	I	G	K	N	W	P	Q	E	K	K	E	K	I	A	D	L	L	F	K	R	E	F	D	E	K	G	N	P	I	G	M	A	L	T	N	W	R	V	N	I	G	A	G	S	Y	E	N	R	E	A	K	E	V	D	N	S	W	N	R	T	E	C	F	L
Template Known Secondary structure												T	T	T								S																	B		T	T	S		B		S				S									S	T	T	T	T	T	T	S	S			S	S	S	T	T					S	B
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
																335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L	G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	D	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		S	P	D	G	K	Y	D	F	T	K	Q	A	G	Q	Q	W	F	M	K	A	A	R	E	R	G	M	N	N	F	L	F	F	T	.	.	.	.	N	S	A	P	Y	F	M	T	R	S	A	S	T	V	S	T	D	Q	D	C	I	N	L	Q	N	D	K	F	D	D	F	A	R	F	L	V	K	S	A	Q	H	F	R
Template Known Secondary structure			T	T	S		B		T	T	S	S													T	T									.	.	.	.	S	S			G	G	G	S	S	S	S	S	S	B		S		S	S	S		S	S		T	T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		401	.	.		.	.	.	.	.	.	410	.	.	.	.	.														.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure					.													.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.													.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	P	.	S	V	V	M	W	S	I	A	N	E	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	P	Q	G	A	R	E	Y	F	A	P	L	A	E	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.													.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.													.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	G	F	H	V	N	Y	I	S	P	N	N	E	P	N	G	Q	W	H	A	N	S	F	Q	E	G	S	F	A	T	K	A	D	L	Y	R	M	V	E	E	L	D	K	A	I	S	E	A	Q	I	D	T	K	I	L	I	P	E	V	G	D	M	K	Y	L	F	E	I	D	S	I	A	K	T	P	D	D	I	I
Template Known Secondary structure			T	T										S		T	T	S		G	G	G			S	S		B																							T		S									S	S	G	G	G	G	S				S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
						446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	V	M	F	C	D	A	H	T	D	T	I	S	D	L	F	D	V	L	C	L	N	R	Y	Y	G	W	Y	V	Q	S	G	D	L	E	T	A	E	K	V	L	E	K	E	L	L	A	W	Q	E	K	L	H	Q	P	I	I	I	T	E	Y	G	V	D	T	L	A	G	L	H	S	M	Y	T	D	M	W
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																															.	.	.
Template Conservation																																																				.	.	.
Template Sequence		H	S	M	F	Y	K	D	G	Q	Y	S	V	L	K	F	K	N	L	F	N	C	V	A	A	H	D	Y	W	S	A	Y	P	A	T	L	L	V	D	I	R	N	R	I	H	K	E	L	S	A	N	.	.	.	G	H	N	T	K	F	W	A	S	E	Y	C	I	L	E	K	N	E	E	I	T	M	P	A	S	P	E
Template Known Secondary structure						S	T	T	S	T	T			T	T		T	T										T	T		S	S	S																	T	T	.	.	.	S	S																T	T	T		S	S	S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.		.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.				.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																							.	.	.
Query SS confidence																																		.																							.	.	.
Query Sequence		S	E	E	Y	Q	C	A	W	L	D	M	Y	H	R	V	F	D	R	V	S	A	V	V	G	E	Q	V	W	N	F	A	D	.	F	A	T	S	Q	G	I	L	R	V	G	G	N	K	K	G	I	F	T	R	D	R	.	.	.	K	P	K	S	A	A	F	L	L	Q	K	R
Query Conservation																																		.																							.	.	.
Alig confidence																																		.																							.	.	.
Template Conservation
Template Sequence		R	S	I	N	L	G	L	Y	V	A	R	I	I	H	N	D	L	T	L	A	N	A	S	A	W	Q	W	W	T	A	V	S	L	G	E	D	V	P	I	Q	L	L	P	L	E	G	S	N	G	L	S	L	Q	Y	D	G	E	I	S	T	T	K	M	L	W	T	T	A	N	Y
Template Known Secondary structure																				T	S			S							S			S	S	S	S	S	S							T	T			S	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions