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Job DescriptionP05804
Confidence87.93%DateThu Jan 5 10:58:55 GMT 2012
Rank187Aligned Residues151
% Identity13%Templatec3amlA_
PDB info PDB header:transferaseChain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   308.310.........320........ .330.... .....340.........350.........360.
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Query Sequence  NVLMVHDHALMDWIGANSYRT. . . . . . . . . . . SHYPYA. . . . . . . . . . . . . . . EEMLDWADEHGIVVIDETAAVGFNLSL
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Template Sequence  REFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNV
Template Known Secondary structure  TTT

S

S
GGGTT
S
S
GGG

TT


S
B


T
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   201........210.........220.........230.........240.........250.........260.........270.........280
 
   362....... 370.........380.........390.........400.........410....
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Query Sequence  GIGFEAGN. . . . . . . . . . . . . . . . . . KPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEP. . . . . . . . .
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Template Sequence  TDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEF. . MFDGFRFDGVTSMLYHHHGINK
Template Known Secondary structure  TTSGGGG
SS

GGGSSB

GGGGTTTT
B
TTS..


TTBTTTTTT
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   281........290.........300.........310.........320.........330...... ...340.........350........
 
   415....420.........430.........440.........450.........460
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Query Sequence  . . . . . . . . . . . DTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISDLF
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Template Sequence  GFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGG
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S
GGGTSSTTB

TT


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   359360.........370.........380.........390.........400.........410.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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