Job Description P05804 Confidence 92.20% Date Thu Jan 5 10:58:55 GMT 2012 Rank 175 Aligned Residues 93 % Identity 12% Template c3amkA_ PDB info PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l Resolution 1.90 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.												.	330	.	.	.	.																.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	L	M	V	H	D	H	A	L	M	D	W	I	G	A	N	S	Y	R	T	.	.	.	.	.	.	.	.	.	.	.	S	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	F	A	D	N	V	L	P	R	I	R	A	N	N	Y	N	T	V	Q	L	M	A	I	M	E	H	S	Y	Y	A	S	F	G	Y	H	V	T	N	F	F	A	V	S	S	R	S	G	T	P	E	D	L	K	Y	L	V	D	K	A	H	S	L	G	L	R	V	L	M	D	V	V	H	S	H	A	S	N	N	V
Template Known Secondary structure								T							T	T								S					S		G	G	G	T	T		S		S							G	G	G																T	T										S						T
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380																			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	D	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	G	L	N	G	Y	D	V	G	Q	N	T	H	E	S	Y	F	H	T	G	D	R	G	Y	H	K	L	W	D	S	R	L	F	N	Y	A	N	W	E	V	L	R	F	L	L	S	N	L	R	Y	W	M	D	E	F	M
Template Known Secondary structure		T	T	S	G	G	G	G		S	S			G	G	G	S	S	B			G	G	G	G			T	T	T	T				B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions