Job Description P05804 Confidence 28.99% Date Thu Jan 5 10:58:55 GMT 2012 Rank 337 Aligned Residues 175 % Identity 13% Template c2ylaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis Resolution 2.70 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	H	K	P	F	Y	F	T	G	F	G	R	H	E	D	A	D	L	R	G	K	G	F	D	N	V	L	M	V	H	D	H	A	L	M	D	W	I	G	A	N	S	Y	R	T	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.
Template Sequence		L	A	K	N	K	V	I	S	I	D	A	G	R	K	.	.	.	.	.	.	.	.	Y	F	T	L	N	Q	L	K	R	I	V	D	K	A	S	E	L	G	Y	S	D	V	H	L	L	L	G	N	D	G	L	R	F	L	L	D	D	M	T	I	T	A	N	G	K	T	Y	A	S	D	D	V	K	K	A	I	I	E
Template Known Secondary structure			T	S								T	T	T	S	.	.	.	.	.	.	.	.																		T										S	S	S	B					S							T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.
Template SS confidence
		629	630	.	.	.	.	.	.	.	.	.	640	.	.									.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
															331	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.									.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	Y	A	E	.	.	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	A	A	V	G	F	N	L	S	L	G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	.	.	.	.	.	.	.	.	E	E	A	V	N	G	E	T	Q	Q	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	K	A	Y	Y	D	D	P	N	G	T	A	L	T	Q	A	E	V	T	E	L	I	E	Y	A	K	S	K	D	I	G	L	I	P	A	I	N	S	P	G	H	M	D	A	M	L	V	A	M	E	K	L	G	I	K	N	P	Q	A	H	F	D	K	V	S	K	T	T	M	D	L	K	N	E	E	A	M	N	F
Template Known Secondary structure										T	T		S																T	T	T										S	S	S											T	T								S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.																.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	Q	A	I	K	E	L	I	A	R	D	K	N	H	P	S	V	V	M	W	S	I	A	N	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	R	P	Q	G	A	R	E	Y	F	A	P	L	A	E	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	V	M	F	C	D	A	H
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		V	K	A	L	I	G	K	Y	M	D	F	F	A	G	.	K	T	K	I	F	N	F	G	T	D	Q	Y	A	N	D	A	T	S	A	Q	G	W	Y	Y	L	K	W	Y	Q	L	Y	G	K	F	A	E	Y	A	N	T	L	A	A	M	A	K	E	R	G	L	Q	P	M	A	F	N	D	G	F	Y	Y	E	D	K	D
Template Known Secondary structure														B	T	.	T	B	S								S	T	T					T	S									T	T																			T	T							S	T	T	T	T	G	G	G
Template Predicted Secondary structure																.
Template SS confidence
		781	.	.	.	.	.	.	.	.	790	.	.	.	.		.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	T	I	S	D	L	F	D	V	L	C	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	Q	F	D	K	D	V	L	I	S	Y	W	S
Template Known Secondary structure		S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		860	.	.	.	.	.	.	.	.	.	870	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions