Job Description P05804 Confidence 96.71% Date Thu Jan 5 10:58:55 GMT 2012 Rank 163 Aligned Residues 262 % Identity 12% Template c2wnwB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:activated by transcription factor ssrb; PDBTitle: the crystal structure of srfj from salmonella typhimurium Resolution 2.00 Å

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		306	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330												.	.	.	.	.	.																			.	.	.	340	.	.	.	.	.			.	.	.	.	350	.
Predicted Secondary structure															.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query SS confidence															.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query Sequence		F	D	N	V	L	M	V	H	D	H	A	L	M	.	.	.	D	W	I	G	A	N	S	Y	R	T	S	H	.	.	.	.	.	.	.	.	.	.	.	Y	P	Y	A	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	D	W	A	D	E	H	G	.	.	I	V	V	I	D	E
Query Conservation															.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Alig confidence															.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		M	S	E	K	T	K	A	Q	F	L	S	L	Y	F	S	A	Q	E	H	N	Y	T	L	A	R	M	P	I	Q	S	C	D	F	S	L	G	N	Y	A	Y	V	D	S	S	A	D	L	Q	Q	G	R	L	S	F	S	R	D	E	A	H	L	I	P	L	I	S	G	A	L	R	L	N	P	H	M	K	L	M	A	S
Template Known Secondary structure		S															T	T	T	T										S			S	S	S	S	S				S			S						T	T											T												T	T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.										420	.
Predicted Secondary structure																																																					.																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.																		.	.	.	.	.	.	.	.	.
Query Sequence		T	A	A	V	G	F	N	L	S	L	G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A	H	L	Q	A	I	K	E	L	I	A	R	D	K	N	H	.	P	S	V	V	M	W	S	I	A	N	E	P	D	T	R	P	Q	.	.	.	.	.	.	.	.	.	G	A
Query Conservation																																																					.																		.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																							.																		.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		P	W	S	P	P	A	F	M	K	T	N	N	D	M	N	G	G	G	K	L	.	.	.	.	.	.	.	.	.	R	R	E	C	Y	A	D	W	A	D	I	I	I	N	Y	L	L	E	Y	R	R	H	G	I	N	V	Q	A	L	S	V	Q	N	E	P	V	A	V	K	T	W	D	S	C	L	Y	S	V	E	E	E
Template Known Secondary structure			S				G	G	G	B	T	T	S		S	B	S			B	B	.	.	.	.	.	.	.	.	.		G	G	G																	T	T	T								S		S	S	T	T				S	S	B			B
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.										.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		422	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.										.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure								.																										.	.	.	.	.	.	.	.	.
Query SS confidence								.																										.	.	.	.	.	.	.	.	.
Query Sequence		R	E	Y	F	A	P	.	L	A	E	A	T	R	K	L	D	P	T	R	P	I	T	C	V	N	V	M	F	C	D	A	H	.	.	.	.	.	.	.	.	.	T	D	T	I	S	D	L	F	D	V	L	C	L	N	R	Y	Y	G	W	Y	V	Q	S	G	D	L	E	T	A	E	K	V	L	E	K	E	L	L	A
Query Conservation								.																										.	.	.	.	.	.	.	.	.
Alig confidence								.																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	F	A	V	Q	Y	L	R	P	R	L	A	R	Q	G	M	D	E	M	E	I	Y	I	W	D	H	D	K	D	G	L	V	D	W	A	E	L	A	F	A	D	E	A	N	Y	K	G	I	N	G	L	A	F	H	W	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	G	D	H	F	S	Q	I	Q	Y	L
Template Known Secondary structure								T								T	T		T	T										G	G	G									T	T	S															T	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.													.	.	.	.	.	.	.	.	280	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		W	Q	E	K	L	H	Q	P	I	I	I	T	E	Y	G	V	D	T	L	A	G	L	H	S	M	Y	T	D	M	W	S	E	E	Y	Q	C	A	W	L	D	M	Y	H	R	V	F	D	R	V	S	A	V	V	G	E	Q	V	W	N	F	A	.	D	F	A	T	S	Q	G	I	L	R	V	G	G	N	K	K	G	I
Query Conservation																																																															.
Alig confidence																										.	.	.	.	.	.																			.	.												.
Template Conservation																										.	.	.	.	.	.																			.	.
Template Sequence		A	Q	C	L	P	D	K	K	L	L	F	S	E	G	C	V	P	M	E	S	D	A	G	S	.	.	.	.	.	.	Q	I	R	H	W	H	T	Y	L	H	D	M	I	G	N	F	K	S	.	.	G	C	S	G	F	I	D	W	N	L	L	L	N	S	E	G	G	P	N	H	Q	G	N	L	C	E	A	P	I	Q
Template Known Secondary structure						T	T	S										B				S	T	T		.	.	.	.	.	.																			.	.	T									S				T	T	S				T	T				B			S
Template Predicted Secondary structure																										.	.	.	.	.	.																			.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.							.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		571	.	.	.	.				.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		F	T	R	D	R	.	.	.	K	P	K	S	A	A	F	L	L	Q	K	R	W	T	G	M	N	F	G	E	K
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence		Y	D	A	Q	N	D	V	L	R	R	N	H	S	W	Y	G	I	G	H	F	C	R	Y	V	R	P	G	A	R
Template Known Secondary structure				T	T	T	T																T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions