Job Description P05804 Confidence 89.80% Date Thu Jan 5 10:58:55 GMT 2012 Rank 182 Aligned Residues 126 % Identity 19% Template c1qhoA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex Resolution 1.70 Å

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		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																			.	330	.	.	.	.																.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		D	N	V	L	M	V	H	D	H	A	L	M	D	W	I	G	A	N	S	Y	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	H	Y	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	L	D	W	A	D	E	H	G	I	V	V	I	D	E	T	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		D	L	E	G	V	R	Q	K	L	P	Y	L	K	Q	L	G	V	T	T	I	W	L	S	P	V	L	D	N	L	D	T	L	A	G	T	D	N	T	G	Y	H	G	Y	W	T	R	D	F	K	Q	I	E	E	H	F	G	N	W	T	T	F	D	T	L	V	N	D	A	H	Q	N	G	I	K	V	I	V	D	F	V
Template Known Secondary structure									T								T														S	S		S	S	T	T				T	T	S		S									T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
																																															353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	V	G	F	N	L	S	L	G	I	G	F	E	A	G	N	K	P	K	E	L	Y	S	E	E	A	V	N	G	E	T	Q	Q	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	H	S	T	P	F	K	A	N	D	S	T	F	A	E	G	G	A	L	Y	N	N	G	T	Y	M	G	N	Y	F	D	D	A	T	K	G	Y	F	H	H	N	G	D	I	S	N	W	D	D	R	Y	E	A	Q	W	K	N	F	T	D	P	A	G	F	S	L	A	D	L	S	Q	E	N	G	T	I	A	Q	Y
Template Known Secondary structure		T	T						B	T	T	B	T	T	S	T	T	T	T					T	T						S	S	S		T	T	T			B			S		B		S		T	T								S	B				T	T	T						B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Q	A	I	K	E	L	I	A	R	D	K	N	H	P	S	V	V	M	W	S	I	A	N	E	P	D	T	R	P	Q	G	A	R	E	Y	F	A	P	L	A	E	A	T	R	K	L	D	P	T	R	P	I
Query Conservation
Alig confidence													.	.	.															.	.	.	.	.	.
Template Conservation													.	.	.															.	.	.	.	.	.
Template Sequence		L	T	D	A	A	V	Q	L	V	A	H	.	.	.	G	A	D	G	L	R	I	D	A	V	K	H	F	N	.	.	.	.	.	.	S	G	F	S	K	S	L	A	D	K	L	Y	Q	K	K	D	I	F	L	V
Template Known Secondary structure												T	.	.	.	T							T	T	G	G	G	S		.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.															.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions