Job Description P00946 Confidence 96.94% Date Thu Jan 5 10:57:17 GMT 2012 Rank 53 Aligned Residues 165 % Identity 15% Template c3qacA_ PDB info PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. Resolution 2.27 Å

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		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.																							.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	E	D	S	G	L	F	S	P	L	L	L	N	V	V	K	L	N	P	G	E	A	M	F	L	F	A	E	T	P	H	A	Y	L	.	.	.	.	Q	G	V	A	L	E	V	M	A	N	S	D	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	A	G	L
Query Conservation																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	G	C	P	E	T	Y	Q	D	Q	H	Q	K	I	R	H	L	R	E	G	D	I	F	A	M	P	A	G	V	S	H	W	A	Y	N	N	G	D	Q	P	L	V	A	V	I	L	I	D	T	A	N	H	A	N	Q	L	D	K	N	F	P	T	R	F	Y	L	A	G	K	P	Q	Q	E	H	S	N	T	G	N
Template Known Secondary structure			T	T																	T	T							T	T									S	S	S										T	T	S	T	T			S		S	S	S						S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																																		.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		T	P	K	Y	I	D	I	P	E	L	V	A	N	V	K	F	E	A	K	P	A	N	Q	L	L	T	Q	P	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	A	E	L	D	F	P	I	P	V	D	D	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		I	F	R	G	F	E	T	R	L	L	A	E	S	F	G	V	S	E	E	I	A	Q	K	L	Q	A	E	Q	D	D	R	G	N	I	V	R	V	E	G	L	H	T	I	C	S	A	R	L	A	V	N	V	D	D	P	S	K	A	D	V	Y	T	P	E	A	G	R	L	T	T	V	N	S	F	N	L	P	I	L	R
Template Known Secondary structure		G	G	G	G	S										T											T	T	T			S		S										T	T	T	S						T	T		T	T	T		S				T	T	T								T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
					321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.					.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.
Predicted Secondary structure		.	.	.																		.	.	.																	.	.	.	.							.	.																							.
Query SS confidence		.	.	.																		.	.	.																	.	.	.	.							.	.																							.
Query Sequence		.	.	.	F	A	F	S	L	H	D	L	S	D	K	E	T	T	I	S	Q	.	.	.	Q	S	A	A	I	L	F	C	V	E	G	D	A	T	L	W	.	.	.	.	K	G	S	Q	Q	L	.	.	Q	L	K	P	G	E	S	A	F	I	A	A	N	E	S	P	V	T	V	K	G	H	.	G	R	L	A	R	V
Query Conservation		.	.	.																		.	.	.																	.	.	.	.							.	.																							.
Alig confidence		.	.	.																		.	.	.																	.	.	.	.							.	.																							.
Template Conservation
Template Sequence		H	L	R	L	S	A	A	K	G	V	L	Y	R	N	A	M	M	A	P	H	Y	N	L	N	A	H	N	I	M	Y	C	V	R	G	R	G	R	I	Q	I	V	N	D	Q	G	Q	S	V	F	D	E	E	L	S	R	G	Q	L	V	V	V	P	Q	N	F	A	I	V	K	Q	A	F	E	D	G	F	E	W	V	S
Template Known Secondary structure				T										T	T									S	S																			T	T	S										T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		388
Predicted Secondary structure
Query SS confidence
Query Sequence		Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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