 |
Job Description | P00946 | Confidence | 70.31% | Date | Thu Jan 5 10:57:17 GMT 2012 |
Rank | 124 | Aligned Residues | 100 |
% Identity | 11% | Template | c3ebrA_ |
PDB info |
PDB header:unknown function | Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; |
PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution
|
Resolution | 2.60 Å |
|
 |
  |   |
287 | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | |
|
|
. | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | |
|
. | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | |
|
. | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | A | N | V | K | F | E | A | K | P | A | N | Q | L | L | T | . |
. |
. |
Q | P | V | K | Q | G | A | E | L | D | F | P | I | P | V | D | D | . |
. |
F | A | F | S | L | H | D | L | S | D | K | E | T | T | I | S | Q | . |
. |
Q | S | A | A | I | L | F | C | V | E | G | D | A | T | L | W | K | G | S | Q | Q | L |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |
|
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|   |
|   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |
|
|
|   |   |   |
|   |   |   |
|   |
|   |
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |   | . | . |   |
|   |
|   |
Template Sequence |   |
L | F | E | S | I | N | T | G | C | L | D | G | N | D | T | P | W | X | P | F | A | P | Y | S | N | D | V | X | V | K | Y | F | K | I | D | P | V | R | G | E | T | I | T | L | L | K | A | P | A | G | X | E | X | P | R | H | H | H | T | G | T | V | I | V | Y | T | V | Q | G | S | W | R | Y | . |
. |
K | E | H | D | W |
Template Known Secondary structure |   |
G | G | G | T |
|
|
|
|
|
|
| G | G | G | S |
|
|  |  |
| T | T | T |
| S | S | S |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |
| S | S |
| B |
|
|
|  |  |  | S | S |
|  |  |  |  |  |  |  | S |
|  |  |  | . | . | T | T | S | S |
|
Template Predicted Secondary structure |   |
|  |  |
|
|
|
|  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
. | . | . | . | . |
  |
  |   |
360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | |
|
. | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | L | K | P | G | E | S | A | F | I | A | A | N | E | . |
. |
S | P | V | T | V | K | G | H | G | R | L | A | R | V | Y |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |
|
|
|   |   | . | . |   |   |   |   |
|   |
|   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|   |   |   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |
Template Sequence |   |
V | A | H | A | G | S | V | V | Y | E | T | A | S | T | R | H | T | P | Q | S | A | Y | A | E | G | P | D | I | I | T | F |
Template Known Secondary structure |   |
| B |
| T | T |
|  |  |  |  |
| S | S |  |  |  |
|  |  |  | S | S | S | S | S | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|