Job Description P0AG18 Confidence 79.28% Date Thu Jan 5 11:27:51 GMT 2012 Rank 63 Aligned Residues 135 % Identity 11% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		9	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		R	V	A	I	V	M	G	S	K	S	D	.	.	.	W	A	T	M	Q	F	A	A	E	I	F	E	I	L	N	V	P	H	H	V	E	V	V	S	A	H	R	T	P	D	K	L	F	S	F	A	E	S	A	E	E	N	G	Y	Q	V	I	I	A	G	A	G	G	A	A	H	L	P	G	M	I	A	A	K	T	L
Query Conservation													.	.	.
Alig confidence													.	.	.																.
Template Conservation																															.
Template Sequence		R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	A	P	.	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G
Template Known Secondary structure								S		T	T																	T	S	T	.	T									T	T															T	T		S							S	S	G	G	G
Template Predicted Secondary structure																															.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
				86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																										.
Predicted Secondary structure		.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	V	P	V	L	G	V	P	V	Q	S	A	A	L	S	G	V	D	S	L	Y	S	I	V	Q	M	P	R	G	I	P	V	G	T	L	A	I	G	K	A	G	A	A	N	A	A	L	L	A	A	Q	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation		.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.													.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.													.	.	.
Template Sequence		Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	.	.	.	.	.	.	.	.	.	.	L	D	S	Y	D	K	A	Y	Y	V	G	T	.	.	.	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	E
Template Known Secondary structure		T	T							S	S							.	.	.	.	.	.	.	.	.	.			T		T	T							.	.	.																					G	G	G		T	T		S	S	S									S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.											.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	D	K	E	L	H	Q	R	L	N	D	W	R	K	A	Q	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	H	P	D	A	E	A	R	T	T	Y	V	V	K	E	L	N	D
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions