Job Description P0AG18 Confidence 78.38% Date Thu Jan 5 11:27:51 GMT 2012 Rank 65 Aligned Residues 113 % Identity 18% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

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		8	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.
Predicted Secondary structure														.	.	.																																												.																			.	.
Query SS confidence														.	.	.																																												.																			.	.
Query Sequence		A	R	V	A	I	V	M	G	S	K	S	D	.	.	.	W	A	T	M	Q	F	A	A	E	I	F	E	I	L	N	V	P	H	H	V	E	V	V	S	A	H	R	T	P	D	K	L	F	S	F	A	E	S	A	E	E	N	G	.	Y	Q	V	I	I	A	G	A	G	G	A	A	H	L	P	G	M	I	.	.	A
Query Conservation														.	.	.																																												.																			.	.
Alig confidence														.	.	.																																												.																			.	.
Template Conservation
Template Sequence		P	K	L	L	L	V	L	K	G	D	S	N	A	Y	W	R	Q	V	Y	L	G	A	Q	K	A	A	D	E	A	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A	E	D	L	T	P	S	V	A	Q	Y
Template Known Secondary structure									S		S	S	S	T																	T									S	S	T	T																S			S							S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	L	V	P	V	L	G	V	P	V	Q	S	A	A	L	S	G	V	D	S	L	Y	S	I	V	Q	M	P	R	G	I	P	V	G	T	L	A	I	G	K	A	G	A	A	N	A	A	L	L	A	A	Q	I	L	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		R	A	R	N	I	P	V	L	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	D	L	A	G	D	A	H	Q	G	L	V	A	T	.	.	.	D	N	Y	A	A	G	Q	L	A	A	R	A	L	L
Template Known Secondary structure				T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	S	S		S	S						.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.																.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions