Job Description P0AG18 Confidence 75.15% Date Thu Jan 5 11:27:51 GMT 2012 Rank 77 Aligned Residues 158 % Identity 13% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																										.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		R	N	N	P	A	R	V	A	I	V	M	G	S	K	S	D	W	A	T	M	Q	F	A	A	E	I	F	E	I	L	N	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	V	E	V	V	S	A	.	.	.	.	H	R	T	P	D	K	L	F	S	F
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M
Template Known Secondary structure			T	T	T											S	S	T											G	G	G	T							T	T																		T	T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		55	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.
Predicted Secondary structure												.										.	.																			.																																		.	.	.	.
Query SS confidence												.										.	.																			.																																		.	.	.	.
Query Sequence		A	E	S	A	E	E	N	G	Y	Q	.	V	I	I	A	G	A	G	G	A	.	.	A	H	L	P	G	M	I	A	A	K	T	L	V	P	V	L	G	V	.	P	V	Q	S	A	A	L	S	G	V	D	S	L	Y	S	I	V	Q	M	P	R	G	I	P	V	G	T	L	A	I	G	K	A	.	.	.	.	G	A
Query Conservation												.										.	.																			.																																		.	.	.	.
Alig confidence												.										.	.																			.																			.															.	.	.	.
Template Conservation																																																													.
Template Sequence		K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	.	A	T	G	A	P	I	K	F	I	G	T	G	E	K	I	D	D	I	E	P
Template Known Secondary structure											S								G	G	G	G	G	G											S		T	T									S	S		S	S										.	T	T										S	S	S	T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																	.											.	.
Query SS confidence																	.											.	.
Query Sequence		A	N	A	A	L	L	A	A	Q	I	L	A	T	H	D	.	K	E	L	H	Q	R	L	N	D	W	.	.	R	K	A	Q	T	D	E	V	L	E	N
Query Conservation																	.											.	.
Alig confidence																	.											.	.
Template Conservation
Template Sequence		F	D	P	P	R	F	V	S	R	L	L	G	L	G	D	I	Q	G	L	L	E	K	F	K	E	L	E	K	E	V	E	I	K	E	E	D	I	E	R
Template Known Secondary structure												T	T	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions