Job Description P0AG18 Confidence 73.86% Date Thu Jan 5 11:27:51 GMT 2012 Rank 80 Aligned Residues 110 % Identity 13% Template c3brsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans Resolution 2.00 Å

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		10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure												.	.																																																																			.	.
Query SS confidence												.	.																																																																			.	.
Query Sequence		V	A	I	V	M	G	S	K	S	D	.	.	W	A	T	M	Q	F	A	A	E	I	F	E	I	L	N	V	P	H	H	V	E	V	V	S	A	H	R	T	P	D	K	L	F	S	F	A	E	S	A	E	E	N	G	Y	Q	V	I	I	A	G	A	G	G	A	A	H	L	P	G	M	I	A	A	K	T	L	.	.
Query Conservation												.	.																																																																			.	.
Alig confidence												.	.																																																																			.	.
Template Conservation
Template Sequence		I	P	K	V	L	D	D	S	S	D	F	W	S	V	L	V	E	G	A	Q	M	A	A	K	E	Y	E	I	K	L	E	F	M	A	P	E	K	E	E	D	Y	L	V	Q	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A	A	A	D	Y	E	K	T	Y	D	A	A	K	E	I	K	D	A	G
Template Known Secondary structure				S				S	S	S																		T									S	S	T	T															T			S							S		T	T	T	T					T	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	V	L	G	V	P	V	Q	S	A	A	L	S	G	V	D	S	L	Y	S	I	V	Q	M	P	R	G	I	P	V	G	T	L	A	I	G	K	A	G	A	A	N	A	A	L	L	A	A	Q	I	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Sequence		I	K	L	I	V	I	D	S	G	M	K	Q	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	I	T	V	A	T	.	.	.	D	N	I	Q	A	G	I	R	I	G	A	V	T
Template Known Secondary structure								S	S			S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.																.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions