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Job DescriptionP0AG18
Confidence86.90%DateThu Jan 5 11:27:51 GMT 2012
Rank47Aligned Residues135
% Identity19%Templatec2iy3A_
PDB info PDB header:rna-bindingChain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
Resolution16.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30...... ...40. .. ......50......
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Query Sequence  NPARVAIVMGSKSDWATMQFAAEIFEILNVP. . . . . . . . . . . . . . . . . . . . . . . . . HHVEV. . . VS. AHRTPDKLFSFAE
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Template Sequence  KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR
Template Known Secondary structure  TT



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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   57..60.... .....70... ......80.........90. ........100.........110.........120.... ....
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Query Sequence  SAEENGYQ. VIIAGAGGA. . AHLPGMIAAKTLVPVLGV. PVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKA. . . . GAAN
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Template Sequence  LKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARH. VTGKPIYFAGVSEKPEGLEPFY
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   205....210.........220.........230.........240.........250.........260. ........270.........280...
 
   129130.........140.
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Query Sequence  AALLAAQILATHD
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Template Sequence  PERLAGRILGMGD
Template Known Secondary structure  S
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   284.....290......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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