Job Description P0A8T7 Confidence 100.00% Date Wed Jan 25 15:20:19 GMT 2012 Rank 1 Aligned Residues 1368 % Identity 100% Template c3iydD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	F	D	A	I	K	I	A	L	A	S	P	D	M	I	R	S	W	S	F	G	E	V	K	K	P	E	T	I	N	Y	R	T	F	K	P	E	R	D	G	L	F	C	A	R	I	F	G	P	V	K	D	Y	E	C	L	C	G	K	Y	K	R	L	K	H	R	G	V	I	C	E	K	C	G	V	E	V	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	F	D	A	I	K	I	A	L	A	S	P	D	M	I	R	S	W	S	F	G	E	V	K	K	P	E	T	I	N	Y	R	T	F	K	P	E	R	D	G	L	F	C	A	R	I	F	G	P	V	K	D	Y	E	C	L	C	G	K	Y	K	R	L	K	H	R	G	V	I	C	E	K	C	G	V	E	V	T	Q
Template Known Secondary structure							B																	B							B		S	S	S			B		T	T	S	T	T								S	B	T	T	B		S	S	S	S			S	T	T		S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	V	R	R	E	R	M	G	H	I	E	L	A	S	P	T	A	H	I	W	F	L	K	S	L	P	S	R	I	G	L	L	L	D	M	P	L	R	D	I	E	R	V	L	Y	F	E	S	Y	V	V	I	E	G	G	M	T	N	L	E	R	Q	Q	I	L	T	E	E	Q	Y	L	D	A	L	E	E	F	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	V	R	R	E	R	M	G	H	I	E	L	A	S	P	T	A	H	I	W	F	L	K	S	L	P	S	R	I	G	L	L	L	D	M	P	L	R	D	I	E	R	V	L	Y	F	E	S	Y	V	V	I	E	G	G	M	T	N	L	E	R	Q	Q	I	L	T	E	E	Q	Y	L	D	A	L	E	E	F	G	D
Template Known Secondary structure		S	S	T	T	S	S				B				S	S			B		S	T	T	T	S	S	S	S		S	S	S	G	G	G	T			S	S	S	S	T	T	T	T	T	S	S						S	S		S	S	S			S	S					G	G	G	T	T	T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	D	A	K	M	G	A	E	A	I	Q	A	L	L	K	S	M	D	L	E	Q	E	C	E	Q	L	R	E	E	L	N	E	T	N	S	E	T	K	R	K	K	L	T	K	R	I	K	L	L	E	A	F	V	Q	S	G	N	K	P	E	W	M	I	L	T	V	L	P	V	L	P	P	D	L	R	P	L	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	D	A	K	M	G	A	E	A	I	Q	A	L	L	K	S	M	D	L	E	Q	E	C	E	Q	L	R	E	E	L	N	E	T	N	S	E	T	K	R	K	K	L	T	K	R	I	K	L	L	E	A	F	V	Q	S	G	N	K	P	E	W	M	I	L	T	V	L	P	V	L	P	P	D	L	R	P	L	V	P
Template Known Secondary structure								S	T	T	S	S						T												T		S	S	S	S		T	T	T	T					T	T	T										T	T			S	T	T	S	B		S	S						T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	G	G	R	F	A	T	S	D	L	N	D	L	Y	R	R	V	I	N	R	N	N	R	L	K	R	L	L	D	L	A	A	P	D	I	I	V	R	N	E	K	R	M	L	Q	E	A	V	D	A	L	L	D	N	G	R	R	G	R	A	I	T	G	S	N	K	R	P	L	K	S	L	A	D	M	I	K	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	G	G	R	F	A	T	S	D	L	N	D	L	Y	R	R	V	I	N	R	N	N	R	L	K	R	L	L	D	L	A	A	P	D	I	I	V	R	N	E	K	R	M	L	Q	E	A	V	D	A	L	L	D	N	G	R	R	G	R	A	I	T	G	S	N	K	R	P	L	K	S	L	A	D	M	I	K	G	K
Template Known Secondary structure			S	S	S						G	G	G					T						G	G	G	T	T	T	T	T	T	T	S		S	T	T																		T	T	S	S	S			B		S	S	S		S	B				S						T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	R	F	R	Q	N	L	L	G	K	R	V	D	Y	S	G	R	S	V	I	T	V	G	P	Y	L	R	L	H	Q	C	G	L	P	K	K	M	A	L	E	L	F	K	P	F	I	Y	G	K	L	E	L	R	G	L	A	T	T	I	K	A	A	K	K	M	V	E	R	E	E	A	V	V	W	D	I	L	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	R	F	R	Q	N	L	L	G	K	R	V	D	Y	S	G	R	S	V	I	T	V	G	P	Y	L	R	L	H	Q	C	G	L	P	K	K	M	A	L	E	L	F	K	P	F	I	Y	G	K	L	E	L	R	G	L	A	T	T	I	K	A	A	K	K	M	V	E	R	E	E	A	V	V	W	D	I	L	D	E
Template Known Secondary structure		T	T	T	T	T	T								S	S										T	T			T	T													T									T	T	S	S	S		S							T	T	S	S	S	S	T	T				S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	R	E	H	P	V	L	L	N	R	A	P	T	L	H	R	L	G	I	Q	A	F	E	P	V	L	I	E	G	K	A	I	Q	L	H	P	L	V	C	A	A	Y	N	A	D	F	D	G	D	Q	M	A	V	H	V	P	L	T	L	E	A	Q	L	E	A	R	A	L	M	M	S	T	N	N	I	L	S	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	R	E	H	P	V	L	L	N	R	A	P	T	L	H	R	L	G	I	Q	A	F	E	P	V	L	I	E	G	K	A	I	Q	L	H	P	L	V	C	A	A	Y	N	A	D	F	D	G	D	Q	M	A	V	H	V	P	L	T	L	E	A	Q	L	E	A	R	A	L	M	M	S	T	N	N	I	L	S	P	A
Template Known Secondary structure		S	S	S	S								S	S		S	S	S	T	T										S	S	S						S	T	T					T			T	T	T										S							T	T	T	T	S	B	S	T	T			B		S	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	P	I	I	V	P	S	Q	D	V	V	L	G	L	Y	Y	M	T	R	D	C	V	N	A	K	G	E	G	M	V	L	T	G	P	K	E	A	E	R	L	Y	R	S	G	L	A	S	L	H	A	R	V	K	V	R	I	T	E	Y	E	K	D	A	N	G	E	L	V	A	K	T	S	L	K	D	T	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	E	P	I	I	V	P	S	Q	D	V	V	L	G	L	Y	Y	M	T	R	D	C	V	N	A	K	G	E	G	M	V	L	T	G	P	K	E	A	E	R	L	Y	R	S	G	L	A	S	L	H	A	R	V	K	V	R	I	T	E	Y	E	K	D	A	N	G	E	L	V	A	K	T	S	L	K	D	T	T	V
Template Known Secondary structure		S	S	S	B	S					S										S														S	S				T	T				S	S		T					S	B		S	S	S	S	T	T		S	S	S								S	S	S						T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	I	L	W	M	I	V	P	K	G	L	P	Y	S	I	V	N	Q	A	L	G	K	K	A	I	S	K	M	L	N	T	C	Y	R	I	L	G	L	K	P	T	V	I	F	A	D	Q	I	M	Y	T	G	F	A	Y	A	A	R	S	G	A	S	V	G	I	D	D	M	V	I	P	E	K	K	H	E	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	A	I	L	W	M	I	V	P	K	G	L	P	Y	S	I	V	N	Q	A	L	G	K	K	A	I	S	K	M	L	N	T	C	Y	R	I	L	G	L	K	P	T	V	I	F	A	D	Q	I	M	Y	T	G	F	A	Y	A	A	R	S	G	A	S	V	G	I	D	D	M	V	I	P	E	K	K	H	E	I	I
Template Known Secondary structure		T	S	S	S	S	T	T	S	S	T	T	T	S						S	S				T	T									T	T	T	S	S		S					S								T	T	S	S	T	T	S	S							T	T	S	S				T	T					T
Template Predicted Secondary structure
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	E	A	E	V	A	E	I	Q	E	Q	F	Q	S	G	L	V	T	A	G	E	R	Y	N	K	V	I	D	I	W	A	A	A	N	D	R	V	S	K	A	M	M	D	N	L	Q	T	E	T	V	I	N	R	D	G	Q	E	E	K	Q	V	S	F	N	S	I	Y	M	M	A	D	S	G	A	R	G	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	A	E	A	E	V	A	E	I	Q	E	Q	F	Q	S	G	L	V	T	A	G	E	R	Y	N	K	V	I	D	I	W	A	A	A	N	D	R	V	S	K	A	M	M	D	N	L	Q	T	E	T	V	I	N	R	D	G	Q	E	E	K	Q	V	S	F	N	S	I	Y	M	M	A	D	S	G	A	R	G	S	A
Template Known Secondary structure									T	T	T	S						T	S	S		T	T	T	T	T	T	T	S					T	T											T	T	T	T	T	T									S			S	S			S	S	T	T					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	I	R	Q	L	A	G	M	R	G	L	M	A	K	P	D	G	S	I	I	E	T	P	I	T	A	N	F	R	E	G	L	N	V	L	Q	Y	F	I	S	T	H	G	A	R	K	G	L	A	D	T	A	L	K	T	A	N	S	G	Y	L	T	R	R	L	V	D	V	A	Q	D	L	V	V	T	E	D	D	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	I	R	Q	L	A	G	M	R	G	L	M	A	K	P	D	G	S	I	I	E	T	P	I	T	A	N	F	R	E	G	L	N	V	L	Q	Y	F	I	S	T	H	G	A	R	K	G	L	A	D	T	A	L	K	T	A	N	S	G	Y	L	T	R	R	L	V	D	V	A	Q	D	L	V	V	T	E	D	D	C
Template Known Secondary structure									S								S	S	S				S	S						T	T	T										T	T	T	G	G	G	S	G	G	G	S	S	T	T					G	G	G	S					T	T	T	G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
		815	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	H	E	G	I	M	M	T	P	V	I	E	G	G	D	V	K	E	P	L	R	D	R	V	L	G	R	V	T	A	E	D	V	L	K	P	G	T	A	D	I	L	V	P	R	N	T	L	L	H	E	Q	W	C	D	L	L	E	E	N	S	V	D	A	V	K	V	R	S	V	V	S	C	D	T	D	F	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	H	E	G	I	M	M	T	P	V	I	E	G	G	D	V	K	E	P	L	R	D	R	V	L	G	R	V	T	A	E	D	V	L	K	P	G	T	A	D	I	L	V	P	R	N	T	L	L	H	E	Q	W	C	D	L	L	E	E	N	S	V	D	A	V	K	V	R	S	V	V	S	C	D	T	D	F	G	V
Template Known Secondary structure					S	S	S	S	B				S			T	T	T	T								S	S			B		S					S	S	S	S	S		S			T	T															T		S				B			S	T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		815	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.
		895	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	H	C	Y	G	R	D	L	A	R	G	H	I	I	N	K	G	E	A	I	G	V	I	A	A	Q	S	I	G	E	P	G	T	Q	L	T	M	R	T	F	H	I	G	G	A	A	S	R	A	A	A	E	S	S	I	Q	V	K	N	K	G	S	I	K	L	S	N	V	K	S	V	V	N	S	S	G	K	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	A	H	C	Y	G	R	D	L	A	R	G	H	I	I	N	K	G	E	A	I	G	V	I	A	A	Q	S	I	G	E	P	G	T	Q	L	T	M	R	T	F	H	I	G	G	A	A	S	R	A	A	A	E	S	S	I	Q	V	K	N	K	G	S	I	K	L	S	N	V	K	S	V	V	N	S	S	G	K	L	V
Template Known Secondary structure			S	T	T	T		B		S	S	S	S	S	B			T	T			T	T	T					T	T	T	S	G	G	G	G						S		S	S															S	S							S	S							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		895	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.
		975	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	S	R	N	T	E	L	K	L	I	D	E	F	G	R	T	K	E	S	Y	K	V	P	Y	G	A	V	L	A	K	G	D	G	E	Q	V	A	G	G	E	T	V	A	N	W	D	P	H	T	M	P	V	I	T	E	V	S	G	F	V	R	F	T	D	M	I	D	G	Q	T	I	T	R	Q	T	D	E	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	S	R	N	T	E	L	K	L	I	D	E	F	G	R	T	K	E	S	Y	K	V	P	Y	G	A	V	L	A	K	G	D	G	E	Q	V	A	G	G	E	T	V	A	N	W	D	P	H	T	M	P	V	I	T	E	V	S	G	F	V	R	F	T	D	M	I	D	G	Q	T	I	T	R	Q	T	D	E	L	T
Template Known Secondary structure					S							B		T	T	S		B								S	S			B	S	S		T	T					S	S								T	T							S	S								S			B	T	T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		975	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.
		1055	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	S	L	V	V	L	D	S	A	E	R	T	A	G	G	K	D	L	R	P	A	L	K	I	V	D	A	Q	G	N	D	V	L	I	P	G	T	D	M	P	A	Q	Y	F	L	P	G	K	A	I	V	Q	L	E	D	G	V	Q	I	S	S	G	D	T	L	A	R	I	P	Q	E	S	G	G	T	K	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	S	L	V	V	L	D	S	A	E	R	T	A	G	G	K	D	L	R	P	A	L	K	I	V	D	A	Q	G	N	D	V	L	I	P	G	T	D	M	P	A	Q	Y	F	L	P	G	K	A	I	V	Q	L	E	D	G	V	Q	I	S	S	G	D	T	L	A	R	I	P	Q	E	S	G	G	T	K	D	I
Template Known Secondary structure											S	S	S	S		S	S	S	S	S	S									S	S	S		B		B		T	T	T			B							S	S							S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		1055	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.
		1135	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	G	L	P	R	V	A	D	L	F	E	A	R	R	P	K	E	P	A	I	L	A	E	I	S	G	I	V	S	F	G	K	E	T	K	G	K	R	R	L	V	I	T	P	V	D	G	S	D	P	Y	E	E	M	I	P	K	W	R	Q	L	N	V	F	E	G	E	R	V	E	R	G	D	V	I	S	D	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	G	L	P	R	V	A	D	L	F	E	A	R	R	P	K	E	P	A	I	L	A	E	I	S	G	I	V	S	F	G	K	E	T	K	G	K	R	R	L	V	I	T	P	V	D	G	S	D	P	Y	E	E	M	I	P	K	W	R	Q	L	N	V	F	E	G	E	R	V	E	R	G	D	V	I	S	D	G	P
Template Known Secondary structure				S	S	T	T					T	T	T				S	S						S	S			B							S	S	S			S	S	S	S			B		S	S									S								S	S					T	T	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		1135	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.
		1215	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	P	H	D	I	L	R	L	R	G	V	H	A	V	T	R	Y	I	V	N	E	V	Q	D	V	Y	R	L	Q	G	V	K	I	N	D	K	H	I	E	V	I	V	R	Q	M	L	R	K	A	T	I	V	N	A	G	S	S	D	F	L	E	G	E	Q	V	E	Y	S	R	V	K	I	A	N	R	E	L	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	P	H	D	I	L	R	L	R	G	V	H	A	V	T	R	Y	I	V	N	E	V	Q	D	V	Y	R	L	Q	G	V	K	I	N	D	K	H	I	E	V	I	V	R	Q	M	L	R	K	A	T	I	V	N	A	G	S	S	D	F	L	E	G	E	Q	V	E	Y	S	R	V	K	I	A	N	R	E	L	E	A
Template Known Secondary structure								T	T	T	T		S	T	T																	S					G	G	G	T	T	T	T	S	G	G	G	G	S				B				T	T	S		S	S					S			T	T	T	T	T	T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1215	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.
		1295	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	V	G	A	T	Y	S	R	D	L	L	G	I	T	K	A	S	L	A	T	E	S	F	I	S	A	A	S	F	Q	E	T	T	R	V	L	T	E	A	A	V	A	G	K	R	D	E	L	R	G	L	K	E	N	V	I	V	G	R	L	I	P	A	G	T	G	Y	A	Y	H	Q	D	R	M	R	R	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	K	V	G	A	T	Y	S	R	D	L	L	G	I	T	K	A	S	L	A	T	E	S	F	I	S	A	A	S	F	Q	E	T	T	R	V	L	T	E	A	A	V	A	G	K	R	D	E	L	R	G	L	K	E	N	V	I	V	G	R	L	I	P	A	G	T	G	Y	A	Y	H	Q	D	R	M	R	R	R	A
Template Known Secondary structure				S					B											T	T	S		S							S	S	S			T	T									T			B		S		S	S					T	T					S	S	T	T	S		T	T	T	T	T			S		G	G
Template Predicted Secondary structure
Template SS confidence
		1295	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.
		1375	.	.	.	.	1380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	A	P	A	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	E	A	P	A	A	P
Template Known Secondary structure		G	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		1375	.	.	.	.	1380	.	.