Job Description P0A8T7 Confidence 97.70% Date Wed Jan 25 15:20:19 GMT 2012 Rank 13 Aligned Residues 222 % Identity 21% Template c2aujD_ PDB info PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert Resolution 2.70 Å

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		992	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.									1020	.	.	.	.	.	.	.	.	.	1030	.									.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Query Sequence		K	E	S	Y	K	V	P	Y	G	A	V	L	A	K	G	D	G	E	Q	V	A	G	G	E	T	V	A	N	.	.	.	.	.	.	.	.	W	D	P	H	T	M	P	V	I	T	E	V	.	.	.	.	.	.	.	.	S	G	F	V	R	F	T	D	M	I	D	G	Q	T	I	T	R	Q	T	D	E	L	T	G
Query Conservation																														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	T	Y	P	L	P	A	G	V	D	A	L	V	K	D	G	E	E	V	V	K	G	Q	E	L	A	P	G	V	V	S	R	M	D	G	V	A	L	Y	R	F	P	R	R	V	R	V	D	Y	L	R	K	E	R	A	A	L	R	I	P	L	S	A	W	V	E	K	E	A	Y	R	P	G	E	V	L	A	E	L
Template Known Secondary structure									T	T				S	S		T	T					T	T		B	S	S	S	S		B		S	S	S																											T	T	T	B				S				T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		1056	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	S	L	V	V	L	D	S	A	E	R	T	A	G	G	K	D	L	R	P	A	L	K	I	V	D	A	Q	G	N	D	V	L	I	P	G	T	D	M	P	A	Q	Y	F	L	P	G	K	A	I	V	Q	L	E	D	G	V	Q	I	S	S	G	D	T	L	A	R	I	P	Q	E	S	G	G	T	K	D	I	T
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		S	E	P	Y	L	F	R	A	E	E	S	G	V	V	E	L	K	D	L	A	E	G	H	L	I	Y	L	R	Q	E	E	E	V	V	.	.	.	.	.	.	.	A	R	Y	F	L	P	A	G	M	T	P	L	V	V	E	G	E	I	V	E	V	G	Q	P	L	A	E	G	K	G	L	L	R	L	P	R	H	M	T
Template Known Secondary structure		S	S		B			B		S	S										T	T									T	T				.	.	.	.	.	.	.													S		T	T					T	T		B												T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
											1136	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.																				.	.	.	.	1180	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	G	L	P	R	V	A	D	L	F	E	A	R	R	P	K	E	P	A	I	L	A	E	I	S	G	I	V	S	F	G	K	E	T	K	G	K	R	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	T	P	V	D	G	S	D	P	Y	E
Query Conservation		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	E	V	E	A	E	E	E	G	D	S	V	H	L	T	L	F	L	E	W	T	E	P	K	D	Y	K	V	A	P	H	M	N	V	I	V	P	E	G	A	K	V	Q	A	G	E	K	I	V	A	A	I	D	P	E	E	E	V	I	A	E	A	E	G	V	V	H	L	H	E	P	A	S	I	L	V	V	K	A
Template Known Secondary structure											T	T																				S	S					S		T	T					T	T							S	S	G	G	G					S	S	S															S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		1188	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	I	P	K	W	R	Q	L	N	V	F	E	G	E	R	V	E	R	G	D	V	I	S	D	G	P	E	A	P	H	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	Y	P	F	E	D	D	V	E	V	T	T	G	D	R	V	A	P	G	D	V	L	A	D	G	G	K	V	K	S	E	I
Template Known Secondary structure							S	S		B	S			T	T			B		T	T					T	G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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