Job Description P0AAA9 Confidence 18.56% Date Thu Jan 5 11:12:24 GMT 2012 Rank 99 Aligned Residues 66 % Identity 18% Template c1jsdB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:haemagglutinin (ha2 chain); PDBTitle: crystal structure of swine h9 haemagglutinin Resolution 1.80 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	Q	K	I	H	N	D	F	Y	A	Q	S	S	A	L	Q	Q	Q	L	V	T	K	R	Y	E	Y	N	A	L	L	A	A	N	P	P	D	S	S	K	I	N	A	V	A	K	E	M	E	N	L	R	Q	S	L	D	E	L	R	V	K	R	D	I	A	M	A	E	A	G	I	P	R	G	A	G	M
Query Conservation
Alig confidence																																			.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		E	I	E	T	R	L	N	M	I	N	N	K	I	D	D	Q	I	Q	D	I	W	T	Y	N	A	E	L	L	V	L	L	E	N	.	.	.	.	Q	K	T	L	D	E	H	D	A	N	V	N	N	L	Y	N	K	V	K	R	A	.	.	.	.	.	.	.	L	G	S	N	A	M	E	D	G	K	G	C
Template Known Secondary structure		T	T																																.	.	.	.																						.	.	.	.	.	.	.		G	G	G					S	S	S
Template Predicted Secondary structure																																			.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions