Job Description P69826 Confidence 100.00% Date Thu Jan 5 12:12:09 GMT 2012 Rank 1 Aligned Residues 353 % Identity 12% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		1	.	.	.						.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.												.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure						.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	N	K	.	.	.	.	.	S	A	R	A	K	V	Q	A	F	G	G	F	L	T	A	M	V	I	P	N	I	G	A	F	I	A	W	G	F	I	T	A	L	.	.	.	.	.	.	.	.	.	.	.	F	I	P	T	G	W	L	P	N	E	H	F	A	K	I	V	G	P	M	I	T	Y	L	L	P	V	M
Query Conservation						.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.						.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		L	E	K	Y	V	M	P	V	A	G	K	V	A	E	.	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I
Template Known Secondary structure		S	T	T	T	S										.												G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure																.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
						65	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.																								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure		.	.	.	.														.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.														.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	I	G	S	T	G	G	H	L	V	G	G	K	R	.	.	G	A	V	M	G	G	I	G	T	I	G	V	I	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	I	P	M	F	L	G	S	M	I	M	G	P	L	G	G	L	V	I	K	Y	V
Query Conservation		.	.	.	.														.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.														.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L
Template Known Secondary structure															T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
			116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																															.																												.	.	.	.	.
Query SS confidence		.																															.																												.	.	.	.	.
Query Sequence		.	D	K	A	L	E	K	R	I	P	A	G	F	E	M	V	I	N	N	F	S	L	G	I	A	G	M	L	L	C	L	.	L	G	F	E	V	I	G	P	A	V	L	I	A	N	T	F	V	K	E	C	I	E	A	L	V	H	A	.	.	.	.	.	G	Y	L	P	L	L	S	V	I	N	E	P	A	K	V	L
Query Conservation		.																															.																												.	.	.	.	.
Alig confidence		.																															.																												.	.	.	.	.
Template Conservation
Template Sequence		V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V
Template Known Secondary structure				T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		189	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	N	N	A	I	D	Q	G	V	Y	.	.	.	.	.	Y	P	L	G	M	Q	Q	A	S	V	N	G	K	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	M	V	A	S	N	P	G	P	G	L	G	L	L	L	A	F	T	L	F	G	K	G	M	S	K	R	S	A	P	G	A
Query Conservation													.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L
Template Known Secondary structure					T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T													S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.				.	.	.	.																																				.	.	.
Query SS confidence															.				.	.	.	.																																				.	.	.
Query Sequence		M	I	I	H	F	L	G	G	I	H	E	L	Y	.	F	P	Y	.	.	.	.	V	L	M	K	P	L	T	I	I	A	M	I	A	G	G	M	S	G	T	W	M	F	N	L	L	D	G	G	L	V	A	G	P	S	P	.	.	.	G	S	I	F	A	Y	L	A	L	T	P	K	G	S	F	L	A	T	I	A	G
Query Conservation															.				.	.	.	.																																				.	.	.
Alig confidence															.				.	.	.	.																																				.	.	.
Template Conservation
Template Sequence		S	I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L
Template Known Secondary structure		T	S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	G	T	L	V	S	F	A	I	T	S	L	I	L	K	M	E	K	T	V	E	T	E	S	E	D	E	F	A	Q	S	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure																													T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.