 |
Job Description | P69826 | Confidence | 57.79% | Date | Thu Jan 5 12:12:09 GMT 2012 |
Rank | 54 | Aligned Residues | 115 |
% Identity | 16% | Template | c2xhzC_ |
PDB info |
PDB header:isomerase | Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; |
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
|
Resolution | 2.60 Å |
|
 |
  |   |
334 | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | |
|
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
Query Sequence |   |
I | L | K | M | E | K | T | V | E | T | E | S | E | D | E | F | A | Q | S | A | N | A | V | K | A | M | K | Q | E | G | A | F | S | L | S | R | V | K | R | I | A | F | V | C | D | A | G | M | G | S | S | A | M | G | A | T | T | F | R | K | R | L | E | K | A | G | L | A | I | E | V | K | H | Y | A | I | E | N | . |
. |
Query Conservation |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |
| . | . |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
F | Q | Q | A | G | K | E | V | L | A | I | E | R | E | C | L | A | E | L | D | Q | Y | I | N | Q | N | F | T | L | A | C | E | K | M | F | W | C | K | G | K | V | V | V | . |
. |
M | G | M | G | A | S | G | H | I | G | R | K | M | A | A | T | F | A | S | T | G | T | P | S | F | F | V | H | P | G | E | A | A | H | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | S | S |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |
|  |  |  | . | . |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
|  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
. | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
412 | . | . | . | . | . | . | . | 420 | . | . | |
|
|
|
. | . | . | . | . | . | . | 430 | |
|
. | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 |
Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  | . | . | . | . |
|
|  |  |  |  |  |  | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
V | P | A | D | A | D | I | V | V | T | H | . |
. |
. |
. |
A | S | L | E | G | R | V | K | . |
. |
R | V | T | D | K | P | L | I | L | I | N | N | Y | I | G | D | P | K | L | D |
Query Conservation |   |
. | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |
|
|   |
|
|   |
|
|   |   |   |   |
|   |
|   |   |
Template Sequence |   |
D | L | G | M | V | T | P | Q | D | V | V | I | A | I | S | N | S | G | E | S | S | E | I | T | A | L | I | P | V | L | K | R | L | H | V | P | L | I | C | I | T | G | R | P | E | S | S | M | A | R |
Template Known Secondary structure |   |
T | S | T | T |
|
| T | T |
|  |  |  |  |  |
| S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  | S |
| T | T | S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|