Job Description P69826 Confidence 25.96% Date Thu Jan 5 12:12:09 GMT 2012 Rank 99 Aligned Residues 117 % Identity 7% Template c2o7jA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.						.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		T	E	S	E	D	E	F	A	Q	S	A	N	A	V	K	A	M	K	Q	E	G	A	F	S	L	S	R	V	K	R	I	A	F	V	C	D	A	G	M	G	S	S	A	M	G	A	T	T	F	R	K	R	L	E	K	A	G	L	A	I	E	V	K	H	Y	A	I	E	N	V	.	.	.	.	.	P	A	D	A	D
Query Conservation																																																																								.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.
Template Conservation
Template Sequence		D	M	A	N	K	I	L	D	E	A	G	Y	K	K	G	P	D	G	V	R	V	G	P	D	G	T	K	L	G	P	Y	T	I	S	V	P	Y	G	W	T	D	W	M	M	M	C	E	M	I	A	K	N	L	R	S	I	G	I	D	V	K	T	E	F	P	D	F	S	V	W	A	D	R	M	T	K	G	T	F	D
Template Known Secondary structure											T	T					T	T	S					T	T	S		B			S							T	T																		T	T																				T			S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		418	.	420	.	.														.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.			.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		I	V	V	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	L	E	G	R	V	K	R	V	T	D	K	P	L	I	L	I	N	N	Y	.	.	I	G	D	P	K	L	D	T	L	F	N	Q	L	T	A	E
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		L	I	I	S	W	S	V	G	P	S	F	D	H	P	F	N	I	Y	R	F	V	L	D	K	R	L	S	K	P	V	G	E	V	T	W	A	G	D	W	E	R	Y	D	N	D	E	V	V	E	L	L	D	K	A	V	S	T
Template Known Secondary structure												T	T	T	T										G	G	G				T	T	S			S	S	S		T	T															T	S	S
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions