Return to main results Retrieve Phyre Job Id

Job DescriptionP32167
Confidence5.79%DateThu Jan 5 11:49:44 GMT 2012
Rank68Aligned Residues31
% Identity16%Templatec3jxoB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20......... 30.........40....
Predicted Secondary structure 







.



Query SS confidence 















.














Query Sequence  VPAFAWQPQTGDIIFQ. ISRSSQSKAIQLATH
Query Conservation            




 .   
  
  
   
 
Alig confidence 















.














Template Conservation 

     
  

 
 
         
   
 
Template Sequence  VPRGDTEILSGDKLYVIVSAEAKETVEETLLG
Template Known Secondary structure 


TT
B

TT
TTT
Template Predicted Secondary structure 












Template SS confidence 































   186...190.........200.........210.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions