Return to main results Retrieve Phyre Job Id

Job DescriptionP76463
Confidence95.07%DateThu Jan 5 12:23:09 GMT 2012
Rank6Aligned Residues160
% Identity14%Templated1nrfa_
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120.........130...
Predicted Secondary structure 




































...
Query SS confidence 












































































. . .
Query Sequence  PLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQ. . .
Query Conservation 



 





  
         
 
 
   





  
 

 
  


 





 
 

 
    

  

   ...
Alig confidence 












































































...
Template Conservation   





  

 



 
                         

  

  
 
     
   

           
 
 
Template Sequence  APASTYKVFSALLALESGIITKNDSHMTWDGTQYPYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGN
Template Known Secondary structure 

GGGGTSS
SS


B






SSTTTSS
B
T

TT
TT
Template Predicted Secondary structure 



































Template SS confidence 















































































   399400.........410.........420.........430.........440.........450.........460.........470........
 
   134.....140.........150.........160.. .......170.........180.........190.........200........
Predicted Secondary structure 










.....





















Query SS confidence 




























. . . . .













































Query Sequence  APAWLASLTTLKPETSVTVKSLLDSLATL. . . . . PAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIR
Query Conservation 




 

  
 
 
 
 

 

 

   .....
   

  

  
          
 

  







  
     
Alig confidence 




























.....



















......











..





Template Conservation              
   




 
     


 
   
      
   
      ......
   






 ..      
Template Sequence  EDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDFKQSNIETVKDSIRLEESN. . . . . . GRVLSGKTGTSV. . INGELH
Template Known Secondary structure 


S
TTTTTTSSSS
B
TTT


T......T..
SSS
Template Predicted Secondary structure 



















......






..





Template SS confidence 















































































   479480.........490.........500.........510.........520.........530.. .......540.... .....550
 
   209210.........220....
Predicted Secondary structure 











Query SS confidence 















Query Sequence  QGGFAGWLTDGTPLWV
Query Conservation   

 



 





 
Alig confidence 















Template Conservation    



  
       
Template Sequence  AGWFIGYVETADNTFF
Template Known Secondary structure 
SS
Template Predicted Secondary structure 




Template SS confidence 















   551........560......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions