Job Description P76463 Confidence 94.33% Date Thu Jan 5 12:23:09 GMT 2012 Rank 9 Aligned Residues 163 % Identity 17% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		P	L	G	S	L	W	K	L	Y	V	Y	A	W	L	E	D	T	H	Q	P	E	Q	P	Y	Q	C	R	G	N	.	.	.	.	S	P	E	E	V	Y	C	C	Q	A	G	E	S	I	T	R	D	T	A	L	V	R	S	C	G	L	Y	F	A	P	Q	R	L	H	I	G	A	D	V	W	G	Q	Y	W	Q	Q	R
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.
Template Conservation
Template Sequence		E	P	G	S	A	I	K	P	F	V	I	A	K	A	L	D	A	G	K	T	D	L	N	E	R	L	N	T	Q	P	Y	K	I	G	P	S	P	V	R	D	T	H	V	Y	P	S	L	D	V	R	G	I	X	Q	K	S	S	N	V	G	T	S	K	L	S	A	R	F	G	A	E	E	X	Y	D	F	Y	H	E	L
Template Known Secondary structure				G	G	G	G												T	S	S		S	S						S					T	T						S	S			S											T										T	T	S												T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		133																								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																										.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	W	L	A	S	L	T	T	L	K	P	E	T	S	V	T	V	K	S	L	L	D	S	L	A	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	R	W	R	P	I	E	Q	A	T	X	S	F	G	Y	.	G	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	D	G	V	L	L	P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T
Template Known Secondary structure		T	T	T	S					S		T	T									G	G	G											T	T		.	S			B														T	T	T						B	S	B			S	S								S
Template Predicted Secondary structure																																						.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	K	A	Q	E	V	L	L	D	V	V	L	D	E	A	K	I	G	V	A	S	M	L	G	S	R	V	R	V	K	T	W	S	W	F	A	D	D	K	Q	E	I	R	Q	G	G	F	A	G	W	L	T	D	G	T	P	L	W	V
Query Conservation
Alig confidence																																						.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		A	R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	A	G	A	V	D	G	F	D	V	G	A	K	T	G	T	A	R	.	.	.	.	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V	I
Template Known Secondary structure											T	T	T	S	T	T	S	S		G	G	G			T	T	S											.	.	.	.													S	T	T	S
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.					.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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