Job Description P76463 Confidence 89.48% Date Thu Jan 5 12:23:09 GMT 2012 Rank 16 Aligned Residues 165 % Identity 16% Template c2olvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		57	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.								.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.
Predicted Secondary structure												.									.	.	.	.	.	.	.																																										.	.	.	.
Query SS confidence												.									.	.	.	.	.	.	.																																										.	.	.	.
Query Sequence		P	L	G	S	L	W	K	L	Y	V	.	Y	A	W	L	E	D	T	H	.	.	.	.	.	.	.	Q	P	E	Q	P	Y	Q	C	R	G	N	S	P	E	E	V	Y	C	C	Q	A	G	E	S	I	T	R	D	T	A	L	V	R	S	C	G	L	Y	F	A	P	.	.	.	.	Q	R	L	H	I	G	A	D	V
Query Conservation												.									.	.	.	.	.	.	.																																										.	.	.	.
Alig confidence												.									.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation
Template Sequence		P	T	G	S	S	L	K	P	F	L	A	Y	G	P	A	I	E	N	X	K	W	A	T	N	H	A	I	Q	D	E	S	S	Y	Q	V	D	G	S	T	F	R	N	Y	D	T	K	S	H	G	T	V	S	I	Y	D	A	L	R	Q	S	F	N	I	P	A	L	K	A	W	Q	S	V	K	Q	N	A	G	N	D	A
Template Known Secondary structure				G	G	G	G					T												T	T	B						S				S	S	S						S	S		S													T	T																T		T	T
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	G	Q	Y	W	Q	Q	R	Q	A	P	A	.	.	.	W	L	A	S	L	T	T	L	K	P	E	T	S	V	T	V	K	S	L	L	D	S	L	A	T	L	P	A	Q	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	K	F	A	A	K	L	G	L	N	Y	E	G	D	I	G	P	S	E	V	L	G	G	S	A	S	E	F	S	P	T	Q	L	A	S	A	F	A	A	I	A	N	G	G	T	Y	N	N	A	H	S	I	Q	K	V	V	T	R	D	G	E	T	I	E	Y	D	H	T	S	H	K	A	X	S	D	Y	T	A	Y
Template Known Secondary structure								T	T	T				S	S								T	T		T	T																	T	T	S						B								T	T	S													S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
			168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.										.	.	.	.	.	.	.	.	220	.						.	.	.	.
Predicted Secondary structure		.																																													.	.	.	.	.	.	.	.	.											.	.	.	.	.
Query SS confidence		.																																													.	.	.	.	.	.	.	.	.											.	.	.	.	.
Query Sequence		.	A	Q	E	V	L	L	D	V	V	L	D	E	A	K	I	G	V	A	S	M	L	G	S	R	V	R	V	K	T	W	S	W	F	A	D	D	K	Q	E	I	R	Q	G	G	.	.	.	.	.	.	.	.	.	F	A	G	W	L	T	D	G	T	P	.	.	.	.	.	L	W	V	T
Query Conservation		.																																													.	.	.	.	.	.	.	.	.											.	.	.	.	.
Alig confidence		.																																													.	.	.	.	.	.	.	.	.					.	.	.	.			.	.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		X	L	A	E	X	L	K	G	T	F	K	P	Y	G	S	A	Y	G	H	G	V	S	G	V	N	X	G	A	K	T	G	T	G	T	Y	G	A	E	T	Y	S	Q	Y	N	L	P	D	N	A	A	K	D	V	W	I	N	G	F	.	.	.	.	T	P	Q	Y	T	X	S	V	W	X	G
Template Known Secondary structure								G	G	G	S	S	T	T	S	T	T	T	T				S	S																				T	T			T	T			S								.	.	.	.		S	S
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.					.	.	.	.	.	.	.	620	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions