Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.
Sequence		M	R	P	F	L	Q	E	Y	L	M	R	R	L	L	H	Y	L	I	N	N	I	R	E	H	L	M	L	Y	L	F	L	W	G	L	L	A	I	M	D	L	I	Y	V	F	Y	F
Secondary structure
SS confidence
Disorder		?	?	?																																											?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bn8 chain A Region: 15 - 23 Aligned: 9 Modelled: 9 Confidence: 8.5% Identity: 33% PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda Phyre2 PDB 2d35 chain A Region: 15 - 24 Aligned: 10 Modelled: 10 Confidence: 8.1% Identity: 30% PDB header:cell cycle Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure of cell division reactivation factor,2 ceda Phyre2 PDB 3bux chain B domain 1 Region: 12 - 37 Aligned: 18 Modelled: 26 Confidence: 7.4% Identity: 33% Fold: EF Hand-like Superfamily: EF-hand Family: EF-hand modules in multidomain proteins Phyre2 PDB 3dlq chain I domain 1 Region: 8 - 21 Aligned: 14 Modelled: 14 Confidence: 6.5% Identity: 29% Fold: 4-helical cytokines Superfamily: 4-helical cytokines Family: Interferons/interleukin-10 (IL-10) Phyre2 PDB 2bid chain A Region: 9 - 29 Aligned: 21 Modelled: 21 Confidence: 6.4% Identity: 33% Fold: Toxins' membrane translocation domains Superfamily: Bcl-2 inhibitors of programmed cell death Family: Bcl-2 inhibitors of programmed cell death Phyre2 PDB 3arc chain L Region: 32 - 44 Aligned: 13 Modelled: 13 Confidence: 5.7% Identity: 46% PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution Phyre2 1 c2bn8A_ 2 c2d35A_ 3 d3buxb1 4 d3dlqi1 5 d2bida_ 6 c3arcl_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bn8A_ 8.5 33 PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda 2 c2d35A_ 8.1 30 PDB header:cell cycle Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure of cell division reactivation factor,2 ceda 3 d3buxb1 7.4 33 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 4 d3dlqi1 6.5 29 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 5 d2bida_ 6.4 33 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 6 c3arcl_ 5.7 46 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0