 |
Job Description | P0AC00 | Confidence | 61.98% | Date | Thu Jan 5 11:16:48 GMT 2012 |
Rank | 128 | Aligned Residues | 95 |
% Identity | 8% | Template | d1pvda2 |
SCOP info | Thiamin diphosphate-binding fold (THDP-binding)
| Thiamin diphosphate-binding fold (THDP-binding)
| Pyruvate oxidase and decarboxylase Pyr module
|
Resolution | 2.30 |
|
 |
  |   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | A | I | V | E | E | M | V | K | R | D | I | D | R | I | Y | F | V | A | C | G | S | P | L | N | A | A | Q | T | A | K | H | L | A | D | R | F | S | D | L | Q | V | Y | A | I | S | G | W | E | . |
. |
. |
F | C | D | N | T | P | Y | R | L | D | D | R | C | A | V | I | G | V | S | D | Y | G | K | T | E | E | V | I |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |
|
|   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
| . | . |
|   |
|
|   |   |   |   |   |
|   |   |
| . | . |
|   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|
| . |   |   |
|   |   |
Template Sequence |   |
K | Y | L | F | E | R | L | K | Q | V | N | V | N | T | V | F | . |
. |
G | L | P | G | D | F | N | L | S | L | L | D | K | . |
. |
I | Y | E | V | E | G | M | R | W | A | G | N | A | N | E | L | N | A | A | Y | A | A | D | G | Y | A | R | I | K | G | M | S | C | I | I | T | T | F | G | V | G | . |
E | L | S | A | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  | . | . |  |
|
|
| T | T | T |  |  |  |  |  | G | . | . | G | G | G | S | T | T |
|  |  |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  | T | T |  |  | . |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  | . | . |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | |
|
. | . | . | . | . | . | 30 | . | . | . | . | . | . | |
|
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | |
. | . | 80 | . | . |
  |
  |   |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | L | E | L | G | R | A | C | G | A | L | T | A | A | F | T | K | R | A | D | S | P |
Query Conservation |   |
  |
|   |   |   |
|
|   |   |
|   |   |   |
|   |
|
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |   |   |
|
|
|   |
|   |
|   |   |   |   |   |
Template Sequence |   |
N | G | I | A | G | S | Y | A | E | H | V | G | V | L | H | V | V | G | V | P | S | I | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|