Job Description P0A6H5 Confidence 98.63% Date Thu Jan 5 11:03:09 GMT 2012 Rank 88 Aligned Residues 159 % Identity 17% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		R	E	I	V	S	E	L	D	K	H	I	I	G	Q	D	N	A	K	R	S	V	A	I	A	L	R	N	R	W	R	R	M	Q	L	N	E	E	L	R	H	E	V	T	P	K	N	I	L	M	I	G	P	T	G	V	G	K	T	E	I	A	R	R	L	A	K	L	A	.	.	.	N	A	P	F	I	K	V	E	A
Query Conservation																																																																						.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	.	.	.	.	.	.	.	.	.	.	.	.	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V
Template Known Secondary structure							T	T								S												.	.	.	.	.	.	.	.	.	.	.	.			T	T			S							S	T	T	S	S												S	T	T	T	T	S							T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.													.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	F	T	E	V	G	Y	V	G	K	E	V	D	S	I	I	R	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	V	K	M	V	R	V	Q	A	I	E	K	N	R	Y	R	A	E	E	L	A	E	E	R	I	L	D	V	L	I	P	P	A	K	N	N	W	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.
Template Sequence		A	S	I	P	R	D	.	.	.	.	.	.	.	.	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E
Template Known Secondary structure		T	T	S				.	.	.	.	.	.	.	.									B		T	T	S	S	T	T			S		B							T	T	T	S						S	G	G	G																S					B	T			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		Q	T	E	Q	Q	Q	E	P	S	A	A	R	Q	A	F	R	K	K	L	R	E	G	Q	L	D	D	K	.	.	.	.	.	.	E	I	E	I	D	L	A	A	A	P	M	G	V	E
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E
Template Known Secondary structure													S	S								T	T	S	S									T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions