Return to main results Retrieve Phyre Job Id

Job DescriptionP25889
Confidence99.96%DateThu Jan 5 11:42:42 GMT 2012
Rank24Aligned Residues276
% Identity15%Templated1kbia1
SCOP infoTIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.. .......30.........40... ......50.........60.........70....
Predicted Secondary structure 









.......










.












Query SS confidence 



















. . . . . . .




















.






























Query Sequence  TKDLSITFCGVKFPNPFCLS. . . . . . . SSPVGNCYEMCAKAYDTGWGG. VVFKTIGFFIANEVSPRFDHLVKEDTGFIGF
Query Conservation    


    
  
 


  
.......

               
 
 .

 


         
               
Alig confidence 



















.......




















.












....













Template Conservation   




 


  
  

 


 
          
   
 
  
   

    

 
   


....
            
Template Sequence  KVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEE. . . . IIEAAPSDKQIQWY
Template Known Secondary structure  S
B

TTSSS


S
GGGT
TTTTSSSS



TT
SS
....T


SS

Template Predicted Secondary structure 





























....






Template SS confidence 















































































   176...180.........190.........200.........210.........220.........230....... ..240.........250.
 
   75....80.........90.........100.........110.........120.........130.........140.........150....
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  KNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPE
Query Conservation   
                            
 

 
                 

 



 
 
       
        
Alig confidence 













































.........
























Template Conservation 


   
       
 

   
  

  


 
  
 
  
     .........                         
Template Sequence  QLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF. . . . . . . . . SNTKKTNVEESQGASRALSKFIDPS
Template Known Secondary structure 


SST
S

S
SS



.........TT





SS


GGGG
BTTB
TT
Template Predicted Secondary structure 















.........


















Template SS confidence 















































































   252.......260.........270.........280.........290....... ..300.........310.........320..
 
   155....160.........170.........180.........190.........200.........210.........220.........230....
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  LVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAV
Query Conservation      
   
      

 


 
       

  
   




   

        
               

 

  
Alig confidence 


























....





















.....................





Template Conservation       
  

     






    
....
  
   




 






 
.....................
     
Template Sequence  LTWKDIEELKKKTKLPIVIKGVQRTED. . . . VIKAAEIGVSGVVLSNHGGRQL. . . . . . . . . . . . . . . . . . . . . DFSRAP
Template Known Secondary structure 


SS

S....TT
S

TTTTSS.....................TT


Template Predicted Secondary structure 









....











.....................




Template SS confidence 















































































   330.........340.........350...... ...360.........370........ .380....
 
   235....240.........250.........260.........270.........280....... ..290 .........300......
Predicted Secondary structure 













....


....
Query SS confidence 




















































. . . .


. . . .















Query Sequence  KPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQ. . . . YGY. . . . RIVEDMASGLSHYLAD
Query Conservation   
 

  
  
        



  


    

   
 


  


 

   .... 
 ....     
   
   
  
Alig confidence 




















































....


....















Template Conservation     

 
        
   
 







 
 

 









 



 
  

  
  

   
  
  

   
 
Template Sequence  IEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRL
Template Known Secondary structure  TTT
BTTBSS

ST
S
Template Predicted Secondary structure 
















Template SS confidence 















































































   385....390.........400.........410.........420.........430.........440.........450.........460....
 
   307..310......
Predicted Secondary structure 




Query SS confidence 









Query Sequence  QGFDSLQEMV
Query Conservation   
        
Alig confidence 









Template Conservation   
  

 

 
Template Sequence  LGVTSIAELK
Template Known Secondary structure  T

BGGG

Template Predicted Secondary structure 






Template SS confidence 









   465....470....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions