Job Description P25889 Confidence 75.58% Date Thu Jan 5 11:42:42 GMT 2012 Rank 422 Aligned Residues 221 % Identity 19% Template c3t4cD_ PDB info PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria Resolution 1.95 Å

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		7	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure											.	.											.
Query SS confidence											.	.											.
Query Sequence		S	I	T	F	C	G	V	K	F	.	.	P	N	P	F	C	L	S	S	S	P	.	V	G	N	C	Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F	K	N	M	E	Q	I	A	E	H
Query Conservation											.	.											.
Alig confidence											.	.											.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		S	M	K	L	Y	D	F	E	V	G	L	D	Q	P	F	F	L	I	A	G	T	C	V	V	E	S	E	Q	M	T	I	D	T	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	I	C	A	K	L	N	V	P	F	I	Y	K	S	S	M	.	.	.	.	.
Template Known Secondary structure						T	T				S	T	T	S									S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T										.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	G	E	N	E	Q	Q	W	E	E	L	A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	P	Q	M	T	S	H	A	M	G	S	D	V	G	Q	S	P	E	L	V	E	K	Y	C	R	A	V
Query Conservation
Alig confidence		.	.															.											.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation		.	.															.											.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		.	.	D	E	G	L	R	I	L	G	E	V	K	R	Q	L	.	G	L	P	V	L	T	D	V	H	S	.	.	.	.	.	.	I	D	E	I	E	Q	V	A	S	V	.	V	D	V	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	T	P	A	F	L	C	R	Q	T	D	F	I	H	A	C	A	R	.	.
Template Known Secondary structure		.	.															.	T									S	.	.	.	.	.	.									T	T	.		S				.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	T										T	.	.
Template Predicted Secondary structure		.	.															.											.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
				70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.		.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure													.	.																			.	.	.	.	.	.
Query SS confidence													.	.																			.	.	.	.	.	.
Query Sequence		K	R	G	S	T	L	P	M	L	A	K	.	.	M	T	P	N	I	G	D	M	C	E	V	A	L	A	A	K	R	G	.	.	.	.	.	.	G	A	D	G	I	A	A	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G	K	A	V	K
Query Conservation													.	.																			.	.	.	.	.	.
Alig confidence		.	.	.									.	.																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	S	G	K	P	V	N	I	K	K	G	Q	F	L	A	P	H	D	M	K	N	V	I	D	K	A	R	E	A	A	R	E	A	G	L	S	E	D	R	F	M	A	C	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	S	F	G	Y	N	N	L
Template Known Secondary structure		.	.	.	T	S	S								T	T	S		G	G	G															T	T			S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S
Template Predicted Secondary structure		.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																									170	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.											.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.							.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.							.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E	L	R	D	F	P	I	S	G	I	G	.	.	.	.	.	.	.	G	I	E	T	W	E	.	.	D	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	T	T	.	.	.	.	.	.	.	.	.	.	G	I	M	Q	Y	G	Y	R	I	V	E	D	M
Query Conservation																											.	.	.	.	.	.	.							.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.							.	.	.	.	.	.	.							.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		V	S	D	M	R	S	L	A	I	M	R	E	T	S	A	.	.	.	.	P	V	V	F	D	A	T	H	S	V	Q	L	P	G	Q	R	E	F	V	P	V	L	A	R	A	A	V	A	T	G	V	A	G	L	F	M	E	T	H	P	N	P	A	E	A	K	S	D	G	P	N	A	V	P	L	N	R	M	G	A	L
Template Known Secondary structure											G	G	G	G	S	S	.	.	.	.										T						T	T															S								S		T	T	T			T	T	S		S				G	G	G
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	G	L	S	H	Y	L	A	D	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	T	L	V	T	L	D	Q	A	V	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions