Job Description P25889 Confidence 96.21% Date Thu Jan 5 11:42:42 GMT 2012 Rank 289 Aligned Residues 221 % Identity 22% Template c3pg8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																		.																		.	.	.	.
Query SS confidence																		.																		.	.	.	.
Query Sequence		T	K	D	L	S	I	T	F	C	G	V	K	F	P	N	P	.	F	C	L	S	S	S	P	V	G	N	C	Y	E	M	C	A	K	.	.	.	.	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F	K	N	M
Query Conservation																		.																		.	.	.	.
Alig confidence																		.																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	D	T	V	I	D	L	G	D	V	K	I	G	N	G	Y	F	T	I	I	A	G	P	S	V	E	G	R	E	M	L	M	E	T	A	H	F	L	S	E	L	G	V	K	V	L	R	G	G	A	Y	K	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S							S	S				S	T	T																										T	T											.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	I	A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	G	E	N	E	Q	Q	W	E	E	L	A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	P	Q	M	T	S	H	A	M	G	S	D	V	G	Q	S	P	E	L	V	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.															.											.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.															.											.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	E	K	G	L	E	Y	L	R	E	A	A	D	K	Y	.	G	M	Y	V	V	T	E	A	L	G	.	.	.	.	.	.	E	D	D	L	P	K	V	A	E	Y	.	A	D	I	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	I	G	A	R	N	A	Q	N	F	R	L	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.														T	.	T									S	.	.	.	.	.	.	G	G	G								.		S				.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.															.											.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										144	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.		.	.	180	.	.													.	.	.	.	.	.	.	190	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																						.	.																							.	.	.	.
Query SS confidence																						.	.																							.	.	.	.
Query Sequence		K	Y	C	R	A	V	K	R	G	S	T	L	P	M	L	A	K	M	T	P	.	.	N	I	G	D	M	C	E	V	A	L	A	A	K	R	G	G	A	D	G	I	A	A	.	.	.	.	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G
Query Conservation																						.	.																							.	.	.	.
Alig confidence						.	.	.	.	.												.	.																							.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	G	S	.	.	.	.	.	Y	N	K	P	V	L	L	K	R	G	F	M	N	T	I	E	E	F	L	L	S	A	E	Y	I	A	N	S	G	N	T	K	I	I	L	C	E	R	G	I	R	T	F	E	K	A	T	R	N	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				G	G	.	.	.	.	.	G		S								T	T																T	T											B			S		S	S	S	S	S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.											.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	V	K	P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E	L	R	D	F	P	I	S	G	I	G	G	I	E	T	W	.	.	.	.	.	.	E	D	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	.	.	.	.	.	.	.	.	.	.	T	T	G	I	M	Q	Y	G	Y	R	I	V	E	D
Query Conservation																																				.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.												.	.	.														.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.												.	.	.
Template Sequence		.	.	.	.	.	.	.	I	S	A	V	P	I	I	R	K	E	S	.	.	.	H	L	P	I	L	V	D	P	S	H	S	G	G	R	R	D	L	V	I	P	L	S	R	A	A	I	A	V	G	A	H	G	I	I	V	E	V	H	P	E	P	E	K	A	L	S	D	G	K	Q	S	L	D	F	E	L	F	K	E
Template Known Secondary structure		.	.	.	.	.	.	.	T	T									B	.	.	.	S	S						T	T	T	T	T			G	G	G												T		S						B		S		T	T	T		S	S	S	G	G	G		B
Template Predicted Secondary structure		.	.	.	.	.	.	.												.	.	.
Template SS confidence
									252	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	S	G	L	S	H	Y	L	A	D	Q	G	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	Q	E	M	K	K	L	A	D	A	L	G	V	K
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions