Job Description P25889 Confidence 99.48% Date Thu Jan 5 11:42:42 GMT 2012 Rank 75 Aligned Residues 255 % Identity 18% Template c3l5aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus Resolution 1.65 Å

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		8	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.										.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure						.													.	.	.	.	.	.	.	.	.
Query SS confidence						.													.	.	.	.	.	.	.	.	.
Query Sequence		I	T	F	C	.	G	V	K	F	P	N	P	F	C	L	S	S	.	.	.	.	.	.	.	.	.	S	P	V	G	N	C	Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F	K	N	M
Query Conservation						.													.	.	.	.	.	.	.	.	.
Alig confidence						.													.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	L	P	N	G	I	K	I	S	N	R	F	V	L	S	P	X	T	V	N	A	S	T	K	E	G	Y	I	T	K	A	D	L	A	Y	A	A	R	R	S	N	S	A	G	X	Q	V	T	G	A	A	Y	I	E	P	Y	G	K	L	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	F
Template Known Secondary structure					T	T	S				S	S	S											S		T	T														T	T	T	S		S									S	S	G	G	G			S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.																.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																																							.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	I	A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	G	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	Q	W	E	E	L
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	D	H	D	A	C	I	P	G	L	T	N	X	A	S	T	X	K	Q	H	G	S	L	A	I	I	Q	L	A	H	A	G	R	F	S	N	Q	A	I	L	N	F	G	K	V	Y	G	P	S	P	X	T	L	H	S	P	I	E	H	V	V	I	A	X	S	H	E	K	I	N	S	I	I	Q	Q	Y	R	D	A
Template Known Secondary structure				S	S	G	G	G													T	T	S											G	G	G									S					S	S						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.										.	.	140	.	.	.	.			.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.								.	.				.																						.	.	.	.	.	.										.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.								.	.				.																						.	.	.	.	.	.										.	.	.	.
Query Sequence		A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	.	.	.	.	.	.	.	.	.	P	Q	M	T	S	H	A	.	.	M	G	S	.	D	V	G	Q	S	P	E	L	V	E	K	Y	C	R	A	V	K	R	G	S	T	.	.	.	.	.	.	L	P	M	L	A	K	M	T	P	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.								.	.				.																						.	.	.	.	.	.										.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.								.	.				.																						.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		T	L	R	A	I	K	A	G	F	D	G	V	E	I	S	I	A	Q	R	L	L	I	Q	T	F	F	S	T	F	S	N	R	R	T	D	H	Y	G	A	D	S	L	K	N	R	A	R	L	C	L	E	V	X	R	A	V	Q	E	V	I	D	K	E	A	P	D	N	F	I	L	G	F	R	A	T	P	E	E	T	R
Template Known Secondary structure								T	T		S								T	T	S								T	T	T					S	T	T	S	T	T																										T	T									S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
								178	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.	.	.	.													.
Query SS confidence		.	.	.	.	.	.													.
Query Sequence		.	.	.	.	.	.	N	I	G	D	M	C	E	V	A	L	A	A	.	K	R	G	G	A	D	G	I	A	A	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G	K	A	V	K	P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E
Query Conservation		.	.	.	.	.	.													.
Alig confidence		.	.	.	.	.	.													.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	D	L	G	Y	T	I	D	E	F	N	Q	L	I	D	W	V	X	D	V	S	N	I	Q	Y	L	A	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	G	R	H	I	Y	Q	N	T	S	R	T	P	G	D	H	F	G	R	P	V	N	Q	I	V	Y	E	H	L	A
Template Known Secondary structure		T	T																				S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T			G	G	G		B				S	S	T	T	T	T	S	B										T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	D	F	P	I	S	G	I	G	G	I	E	T	W	E	D	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	T	T	G	I	M	Q	Y	G	Y	R	I	V	E	D	M	A	S	G
Query Conservation
Alig confidence		.																									.												.
Template Conservation		.																									.												.
Template Sequence		.	G	R	I	P	L	I	A	S	G	G	I	N	S	P	E	S	A	L	D	A	L	Q	H	A	.	D	X	V	G	X	S	S	P	F	V	T	.	E	P	D	F	V	H	K	L	A	E	Q
Template Known Secondary structure		.	T	S	S						S	S			S								G	G	G		.	S					S	T					.		T	T							T	T
Template Predicted Secondary structure		.																									.												.
Template SS confidence
			297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions