Job Description P25889 Confidence 41.31% Date Thu Jan 5 11:42:42 GMT 2012 Rank 496 Aligned Residues 204 % Identity 15% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F	K	N	M	E	Q	I	A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	V	H	R	S	Y	I	E	S	G	S	D	V	I	L	T	N	T	F	G	A	T	R	M	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	K	H	G	L	E	D	K	L	D	P	I	V	R	N	A	V	R	I	A	R	R	A	A	G	E	K	L	V	F	G	D	I	G
Template Known Secondary structure												T		S					S		T	T		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T		G	G	G																	T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.																				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		110	.	.															.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Query Sequence		G	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	Q	W	E	E	L	A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	P	Q	M	T	S	H	A	M	G	S	D	V	G	Q	S	P	E	L	V	E	K	Y	C	R	A	V	K	R	.	G	S	T	L	P	M	L	A	K
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	G	E	L	P	Y	P	L	G	S	T	L	F	E	E	F	Y	E	N	F	R	E	T	V	E	I	M	V	E	E	G	V	D	G	I	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	F	S	D	I	L	E	L	K	A	A	V	L	A	A	R	E	V	S	R	D	V	F	L	I	A	H
Template Known Secondary structure				S			B	T	T	T	S	S	B																				T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.																					S	S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.															.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		175	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		M	T	.	.	.	.	.	.	.	P	N	I	G	D	M	C	E	V	A	L	A	A	K	R	G	G	A	D	G	I	A	A	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G	K	A	V	K	P	I	A	L	R	F	I	Q	Q	M	R	T
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	F	D	E	K	G	R	S	L	T	G	T	D	P	A	N	F	A	I	T	F	D	E	L	D	I	D	A	L	G	I	N	C	S	L	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	I	L	P	I	F	Q	E	L	S	Q
Template Known Secondary structure						T	T	S			T	T	S												T	S	S		S						S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																															.	.	.	.	.	.	.	.	220	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		H	P	E	L	R	D	F	P	I	S	G	I	G	G	I	E	T	W	E	D	.	.	.	.	.	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	T	T	G	I	M	Q	Y	G	Y	R	I	V	E	D	M	A	S	G	L
Query Conservation																						.	.	.	.	.
Alig confidence					.																	.	.	.	.	.																		.	.	.
Template Conservation					.																																							.	.	.
Template Sequence		Y	T	D	.	K	F	L	V	V	E	P	N	A	G	Y	P	L	K	P	H	D	F	A	V	H	I	D	S	Y	Y	E	L	G	V	N	I	F	G	G	C	C	G	.	.	.	T	T	P	E	H	V	K	L	F	R	K	V	L
Template Known Secondary structure		T			.	S																			T	T						T	T	T		S						T	T	.	.	.
Template Predicted Secondary structure					.																																							.	.	.
Template SS confidence
		224	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions